Definition Mycobacterium avium subsp. paratuberculosis K-10, complete genome.
Accession NC_002944
Length 4,829,781

Click here to switch to the map view.

The map label for this gene is ycbL [C]

Identifier: 41408107

GI number: 41408107

Start: 2218103

End: 2218726

Strand: Direct

Name: ycbL [C]

Synonym: MAP2009

Alternate gene names: 41408107

Gene position: 2218103-2218726 (Clockwise)

Preceding gene: 41408106

Following gene: 41408108

Centisome position: 45.93

GC content: 69.55

Gene sequence:

>624_bases
ATGGCCGGCATCGACAAGATCGTCACCCACGGCACCTTCGAACTCGACGGCGGCAGTTGGGAAGTCGACAACAACATCTG
GATCGTCGGCGACGACTCCGACGTGGTGGTGTTCGACGCCGCGCACACCGCCGAGCCGATCGTGGCGGCCGTCGGCAACC
GCAACGTGGTGGCGGTGGTGTGCACGCACGGCCACAACGACCACGTCACGGTGGCCCCCGAGCTGGGCGCCGCGCTGGAC
GCCCCGGTGCTGCTGCATCCCGGCGACGACGTGCTGTGGCGAATGACCCACCCGGACAAGGACTTCCGCACCATCGCCGA
CGGCGACACCATCGATGTGGCCGGCACCGAGCTGCTGGCGCTGCACACGCCGGGGCACTCCCCCGGCTCGGTGTGCTGGT
ATGCGCCGGAACTCGGCGTGGTGTTCAGCGGCGACACGCTGTTCTCCGGCGGTCCCGGCGCGACGGGACGCTCCTATTCG
GACTTCCCGACCATCCTGCAGTCGATCTCCGGCCGGCTCGGCACCCTGCCCGGCGAAACCGTCGTGCACACCGGCCACGG
CGACAGCACCACCATCGGCGACGAGATCGTGCACTACGAGGAGTGGGTGGCGCGCGGCCACTGA

Upstream 100 bases:

>100_bases
CGAAAAGTTCGTCTCCGAGCGCATCGGGCTCGGCGACGTCGAAGCCGCCTTCCACAACATGCACGACGGCAAGGTGCTGC
GCTCGGTGGTGATGCTGTAA

Downstream 100 bases:

>100_bases
TCCCGGCAAGCCGAACTGACCGGCAACTCAACCACTATCGTTGATCCATGCCTGAACCTGGGACGCCCGAATCGGGCCTC
CAATCAAGCATCGTGGTCCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 206

Protein sequence:

>207_residues
MAGIDKIVTHGTFELDGGSWEVDNNIWIVGDDSDVVVFDAAHTAEPIVAAVGNRNVVAVVCTHGHNDHVTVAPELGAALD
APVLLHPGDDVLWRMTHPDKDFRTIADGDTIDVAGTELLALHTPGHSPGSVCWYAPELGVVFSGDTLFSGGPGATGRSYS
DFPTILQSISGRLGTLPGETVVHTGHGDSTTIGDEIVHYEEWVARGH

Sequences:

>Translated_207_residues
MAGIDKIVTHGTFELDGGSWEVDNNIWIVGDDSDVVVFDAAHTAEPIVAAVGNRNVVAVVCTHGHNDHVTVAPELGAALD
APVLLHPGDDVLWRMTHPDKDFRTIADGDTIDVAGTELLALHTPGHSPGSVCWYAPELGVVFSGDTLFSGGPGATGRSYS
DFPTILQSISGRLGTLPGETVVHTGHGDSTTIGDEIVHYEEWVARGH
>Mature_206_residues
AGIDKIVTHGTFELDGGSWEVDNNIWIVGDDSDVVVFDAAHTAEPIVAAVGNRNVVAVVCTHGHNDHVTVAPELGAALDA
PVLLHPGDDVLWRMTHPDKDFRTIADGDTIDVAGTELLALHTPGHSPGSVCWYAPELGVVFSGDTLFSGGPGATGRSYSD
FPTILQSISGRLGTLPGETVVHTGHGDSTTIGDEIVHYEEWVARGH

Specific function: Unknown

COG id: COG0491

COG function: function code R; Zn-dependent hydrolases, including glyoxylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the metallo-beta-lactamase superfamily. Glyoxalase II family [H]

Homologues:

Organism=Escherichia coli, GI1787158, Length=177, Percent_Identity=31.0734463276836, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1786406, Length=166, Percent_Identity=30.7228915662651, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279 [H]

Pfam domain/function: PF00753 Lactamase_B [H]

EC number: NA

Molecular weight: Translated: 21804; Mature: 21673

Theoretical pI: Translated: 4.34; Mature: 4.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGIDKIVTHGTFELDGGSWEVDNNIWIVGDDSDVVVFDAAHTAEPIVAAVGNRNVVAVV
CCCCHHHHHCCEEEECCCCEEECCEEEEEECCCCEEEEECCCCCCCEEEECCCCCEEEEE
CTHGHNDHVTVAPELGAALDAPVLLHPGDDVLWRMTHPDKDFRTIADGDTIDVAGTELLA
EECCCCCEEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCCEEECCCCEEEECCCEEEE
LHTPGHSPGSVCWYAPELGVVFSGDTLFSGGPGATGRSYSDFPTILQSISGRLGTLPGET
EECCCCCCCCEEEECCCCCEEEECCEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCE
VVHTGHGDSTTIGDEIVHYEEWVARGH
EEEECCCCCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure 
AGIDKIVTHGTFELDGGSWEVDNNIWIVGDDSDVVVFDAAHTAEPIVAAVGNRNVVAVV
CCCHHHHHCCEEEECCCCEEECCEEEEEECCCCEEEEECCCCCCCEEEECCCCCEEEEE
CTHGHNDHVTVAPELGAALDAPVLLHPGDDVLWRMTHPDKDFRTIADGDTIDVAGTELLA
EECCCCCEEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCCEEECCCCEEEECCCEEEE
LHTPGHSPGSVCWYAPELGVVFSGDTLFSGGPGATGRSYSDFPTILQSISGRLGTLPGET
EECCCCCCCCEEEECCCCCEEEECCEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCE
VVHTGHGDSTTIGDEIVHYEEWVARGH
EEEECCCCCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]