| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
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The map label for this gene is ycbL [C]
Identifier: 41408107
GI number: 41408107
Start: 2218103
End: 2218726
Strand: Direct
Name: ycbL [C]
Synonym: MAP2009
Alternate gene names: 41408107
Gene position: 2218103-2218726 (Clockwise)
Preceding gene: 41408106
Following gene: 41408108
Centisome position: 45.93
GC content: 69.55
Gene sequence:
>624_bases ATGGCCGGCATCGACAAGATCGTCACCCACGGCACCTTCGAACTCGACGGCGGCAGTTGGGAAGTCGACAACAACATCTG GATCGTCGGCGACGACTCCGACGTGGTGGTGTTCGACGCCGCGCACACCGCCGAGCCGATCGTGGCGGCCGTCGGCAACC GCAACGTGGTGGCGGTGGTGTGCACGCACGGCCACAACGACCACGTCACGGTGGCCCCCGAGCTGGGCGCCGCGCTGGAC GCCCCGGTGCTGCTGCATCCCGGCGACGACGTGCTGTGGCGAATGACCCACCCGGACAAGGACTTCCGCACCATCGCCGA CGGCGACACCATCGATGTGGCCGGCACCGAGCTGCTGGCGCTGCACACGCCGGGGCACTCCCCCGGCTCGGTGTGCTGGT ATGCGCCGGAACTCGGCGTGGTGTTCAGCGGCGACACGCTGTTCTCCGGCGGTCCCGGCGCGACGGGACGCTCCTATTCG GACTTCCCGACCATCCTGCAGTCGATCTCCGGCCGGCTCGGCACCCTGCCCGGCGAAACCGTCGTGCACACCGGCCACGG CGACAGCACCACCATCGGCGACGAGATCGTGCACTACGAGGAGTGGGTGGCGCGCGGCCACTGA
Upstream 100 bases:
>100_bases CGAAAAGTTCGTCTCCGAGCGCATCGGGCTCGGCGACGTCGAAGCCGCCTTCCACAACATGCACGACGGCAAGGTGCTGC GCTCGGTGGTGATGCTGTAA
Downstream 100 bases:
>100_bases TCCCGGCAAGCCGAACTGACCGGCAACTCAACCACTATCGTTGATCCATGCCTGAACCTGGGACGCCCGAATCGGGCCTC CAATCAAGCATCGTGGTCCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 207; Mature: 206
Protein sequence:
>207_residues MAGIDKIVTHGTFELDGGSWEVDNNIWIVGDDSDVVVFDAAHTAEPIVAAVGNRNVVAVVCTHGHNDHVTVAPELGAALD APVLLHPGDDVLWRMTHPDKDFRTIADGDTIDVAGTELLALHTPGHSPGSVCWYAPELGVVFSGDTLFSGGPGATGRSYS DFPTILQSISGRLGTLPGETVVHTGHGDSTTIGDEIVHYEEWVARGH
Sequences:
>Translated_207_residues MAGIDKIVTHGTFELDGGSWEVDNNIWIVGDDSDVVVFDAAHTAEPIVAAVGNRNVVAVVCTHGHNDHVTVAPELGAALD APVLLHPGDDVLWRMTHPDKDFRTIADGDTIDVAGTELLALHTPGHSPGSVCWYAPELGVVFSGDTLFSGGPGATGRSYS DFPTILQSISGRLGTLPGETVVHTGHGDSTTIGDEIVHYEEWVARGH >Mature_206_residues AGIDKIVTHGTFELDGGSWEVDNNIWIVGDDSDVVVFDAAHTAEPIVAAVGNRNVVAVVCTHGHNDHVTVAPELGAALDA PVLLHPGDDVLWRMTHPDKDFRTIADGDTIDVAGTELLALHTPGHSPGSVCWYAPELGVVFSGDTLFSGGPGATGRSYSD FPTILQSISGRLGTLPGETVVHTGHGDSTTIGDEIVHYEEWVARGH
Specific function: Unknown
COG id: COG0491
COG function: function code R; Zn-dependent hydrolases, including glyoxylases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the metallo-beta-lactamase superfamily. Glyoxalase II family [H]
Homologues:
Organism=Escherichia coli, GI1787158, Length=177, Percent_Identity=31.0734463276836, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI1786406, Length=166, Percent_Identity=30.7228915662651, Blast_Score=62, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001279 [H]
Pfam domain/function: PF00753 Lactamase_B [H]
EC number: NA
Molecular weight: Translated: 21804; Mature: 21673
Theoretical pI: Translated: 4.34; Mature: 4.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGIDKIVTHGTFELDGGSWEVDNNIWIVGDDSDVVVFDAAHTAEPIVAAVGNRNVVAVV CCCCHHHHHCCEEEECCCCEEECCEEEEEECCCCEEEEECCCCCCCEEEECCCCCEEEEE CTHGHNDHVTVAPELGAALDAPVLLHPGDDVLWRMTHPDKDFRTIADGDTIDVAGTELLA EECCCCCEEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCCEEECCCCEEEECCCEEEE LHTPGHSPGSVCWYAPELGVVFSGDTLFSGGPGATGRSYSDFPTILQSISGRLGTLPGET EECCCCCCCCEEEECCCCCEEEECCEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCE VVHTGHGDSTTIGDEIVHYEEWVARGH EEEECCCCCCCCCHHHHHHHHHHHCCC >Mature Secondary Structure AGIDKIVTHGTFELDGGSWEVDNNIWIVGDDSDVVVFDAAHTAEPIVAAVGNRNVVAVV CCCHHHHHCCEEEECCCCEEECCEEEEEECCCCEEEEECCCCCCCEEEECCCCCEEEEE CTHGHNDHVTVAPELGAALDAPVLLHPGDDVLWRMTHPDKDFRTIADGDTIDVAGTELLA EECCCCCEEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCCEEECCCCEEEECCCEEEE LHTPGHSPGSVCWYAPELGVVFSGDTLFSGGPGATGRSYSDFPTILQSISGRLGTLPGET EECCCCCCCCEEEECCCCCEEEECCEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCE VVHTGHGDSTTIGDEIVHYEEWVARGH EEEECCCCCCCCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9537320 [H]