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The map label for this gene is ygcF [C]

Identifier: 52842258

GI number: 52842258

Start: 2284849

End: 2285502

Strand: Reverse

Name: ygcF [C]

Synonym: lpg2041

Alternate gene names: 52842258

Gene position: 2285502-2284849 (Counterclockwise)

Preceding gene: 52842259

Following gene: 52842257

Centisome position: 67.27

GC content: 38.38

Gene sequence:

>654_bases
ATGAAACGATTTAATGAACAATTAAGAATTACGGAGATTTTTCATTCATTGCAAGGAGAATCAGTAACTGTAGGTTTGCC
TACTGTATTTGTTCGCCTGACAGGCTGCCCATTGCGATGTCAGTATTGTGATACGGCTTATGCTTTTTCAGGTGGTGAAG
TTGTTGAAATAGATGATATTTTGAATAAAGTAGCTTCATATCAATGTCAGCATGTTTGTGTTACTGGTGGAGAACCACTT
GCTCAACCTGGCTGTATTCTTTTATTAAGCAAACTTTGTGATGCAGGGTACTCTGTCTCTTTGGAAACCAGTGGCGCCAG
AGATATAGCCTCTGTAGATCAACGAGTTATGATCGTTATGGACTTAAAAACTCCTGATTCCAGGGAAGCAGATAAAAACT
TGCTGTCCAATTTGAGTTTTCTGAAGCCCACTGATCAGATTAAGTTTGTGCTATGCAGCCGAACTGATTATGAATGGGCA
TGTAGTATGCTGAGTGAATATCAGTTGGCTGAACGGGTACAACTCTTATTTTCTCCGAGTTGGAATCAGCTAAATCCTAC
TAATCTTGCAAATTGGATAATTCAGGATAAATTACCAGTTCGTTTTCAACTACAATTACATAAAATTTTATGGAATGATG
CACCTGGTCATTGA

Upstream 100 bases:

>100_bases
AGCAAGAAGCTAAAAAGCGTTTTCAACAAGTTGTTAAAACATATCCTGATACACCAACAGCGCAACTGGCCAGCTCTAAA
TTGGAAGCAATTAATGCTTT

Downstream 100 bases:

>100_bases
CCTCAAGGAGACTAACTATGCATTGGTTTGCTCAGGCACCAGCTAATATTGCTTTGATCAAATATATGGGTAAAAAGGAT
GAAAATTCCAATTTACCTGA

Product: radical activating enzyme

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MKRFNEQLRITEIFHSLQGESVTVGLPTVFVRLTGCPLRCQYCDTAYAFSGGEVVEIDDILNKVASYQCQHVCVTGGEPL
AQPGCILLLSKLCDAGYSVSLETSGARDIASVDQRVMIVMDLKTPDSREADKNLLSNLSFLKPTDQIKFVLCSRTDYEWA
CSMLSEYQLAERVQLLFSPSWNQLNPTNLANWIIQDKLPVRFQLQLHKILWNDAPGH

Sequences:

>Translated_217_residues
MKRFNEQLRITEIFHSLQGESVTVGLPTVFVRLTGCPLRCQYCDTAYAFSGGEVVEIDDILNKVASYQCQHVCVTGGEPL
AQPGCILLLSKLCDAGYSVSLETSGARDIASVDQRVMIVMDLKTPDSREADKNLLSNLSFLKPTDQIKFVLCSRTDYEWA
CSMLSEYQLAERVQLLFSPSWNQLNPTNLANWIIQDKLPVRFQLQLHKILWNDAPGH
>Mature_217_residues
MKRFNEQLRITEIFHSLQGESVTVGLPTVFVRLTGCPLRCQYCDTAYAFSGGEVVEIDDILNKVASYQCQHVCVTGGEPL
AQPGCILLLSKLCDAGYSVSLETSGARDIASVDQRVMIVMDLKTPDSREADKNLLSNLSFLKPTDQIKFVLCSRTDYEWA
CSMLSEYQLAERVQLLFSPSWNQLNPTNLANWIIQDKLPVRFQLQLHKILWNDAPGH

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI1789139, Length=129, Percent_Identity=33.3333333333333, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 24417; Mature: 24417

Theoretical pI: Translated: 5.28; Mature: 5.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
4.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRFNEQLRITEIFHSLQGESVTVGLPTVFVRLTGCPLRCQYCDTAYAFSGGEVVEIDDI
CCCHHHHHHHHHHHHHHCCCEEEEECCEEEEEECCCCEEEEECCCEEEECCCCEEEHHHH
LNKVASYQCQHVCVTGGEPLAQPGCILLLSKLCDAGYSVSLETSGARDIASVDQRVMIVM
HHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEECCCCHHHHHCCCEEEEEE
DLKTPDSREADKNLLSNLSFLKPTDQIKFVLCSRTDYEWACSMLSEYQLAERVQLLFSPS
ECCCCCCCHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCC
WNQLNPTNLANWIIQDKLPVRFQLQLHKILWNDAPGH
CCCCCHHHHHHHHCCCCCCEEEEEEEEEHHCCCCCCC
>Mature Secondary Structure
MKRFNEQLRITEIFHSLQGESVTVGLPTVFVRLTGCPLRCQYCDTAYAFSGGEVVEIDDI
CCCHHHHHHHHHHHHHHCCCEEEEECCEEEEEECCCCEEEEECCCEEEECCCCEEEHHHH
LNKVASYQCQHVCVTGGEPLAQPGCILLLSKLCDAGYSVSLETSGARDIASVDQRVMIVM
HHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEECCCCHHHHHCCCEEEEEE
DLKTPDSREADKNLLSNLSFLKPTDQIKFVLCSRTDYEWACSMLSEYQLAERVQLLFSPS
ECCCCCCCHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCC
WNQLNPTNLANWIIQDKLPVRFQLQLHKILWNDAPGH
CCCCCHHHHHHHHCCCCCCEEEEEEEEEHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]