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The map label for this gene is ybgF [C]

Identifier: 52842259

GI number: 52842259

Start: 2285499

End: 2286467

Strand: Reverse

Name: ybgF [C]

Synonym: lpg2042

Alternate gene names: 52842259

Gene position: 2286467-2285499 (Counterclockwise)

Preceding gene: 52842260

Following gene: 52842258

Centisome position: 67.29

GC content: 39.22

Gene sequence:

>969_bases
ATGATTAATTGCAAAAAATCCATTATCACCCTATGTTTTGTACTGATGCTTCCTTTCGCCTCATGGGCAGAAGCGCCAGT
AATAGATGATAGTGAAAATTTTGCAATGATTGACAGACAAGAGGAGTATGAAGCTCCTCTTGTCAATCCCAAGTACGATA
ATCCTCAAATTGAGAATGCTGAGTTGGATGGGTCTCAAAATGATAACTACTCAACCGATACCTCTCAATCCTATGATGAA
CCCGCACTTGTCAAAGAAGACCGAAGTACTATCAGTGACAATGCAAAGTTAATTGATAAAATTCAGCAGCTTCAAAAGGA
AATACAAGAGTTACGTGGCCAGCTTGAAGTACAGGCACACGATTTGAAATTATTACAGCAGCAGCAAGTCGCTTTCTACA
AGGATCTGGATTCTCGATTATCCAATTCTTCAACTTCAGCAAAAACTGTTCAAAATGATAAACCAGCAACAGATATTTCA
TTGGGATCTAATTCGCCAGAGACTTTAAAAGTGGCTTCTCCTCAAATCAAAGCAGGATCATCTAATGGTAAACCTCAGCC
TGTTGTCGCTGTTTCCAGGGCTAATCCTGCTGATGAACAGATAAGCTACCTGGCTGCATACGAGTTAGTTAAAAATAAAC
GCTATGATGAAGCGATTAAGTCTATGCAGACTTTTGTGCAAAAATATCCCAGAGGTGGTTACACCGCGAATGCAGAGTAC
TGGCTAGGTGAATTATATCTTGTTAAAAAAGACTATTCTAAAGCAATAGAACATTTCGAGATTGTTTTACAGCAATATCC
TTCATCCAGCAAGGCTGCAGCCAGTTTGTTAAAATCTGGTTATGCTTATGCCGAGAAAGGTGACAAGCAAGAAGCTAAAA
AGCGTTTTCAACAAGTTGTTAAAACATATCCTGATACACCAACAGCGCAACTGGCCAGCTCTAAATTGGAAGCAATTAAT
GCTTTATGA

Upstream 100 bases:

>100_bases
GAGTAGTTAGCTACGGCAAAGAGCGCCCGGCTAATTATGGTCATGATGAAGCGTCGCATGCGCAGAATCGACGCGTAGAG
TTTATTTATGAGGCAACAAG

Downstream 100 bases:

>100_bases
AACGATTTAATGAACAATTAAGAATTACGGAGATTTTTCATTCATTGCAAGGAGAATCAGTAACTGTAGGTTTGCCTACT
GTATTTGTTCGCCTGACAGG

Product: outer membrane protein

Products: NA

Alternate protein names: ORFD [H]

Number of amino acids: Translated: 322; Mature: 322

Protein sequence:

>322_residues
MINCKKSIITLCFVLMLPFASWAEAPVIDDSENFAMIDRQEEYEAPLVNPKYDNPQIENAELDGSQNDNYSTDTSQSYDE
PALVKEDRSTISDNAKLIDKIQQLQKEIQELRGQLEVQAHDLKLLQQQQVAFYKDLDSRLSNSSTSAKTVQNDKPATDIS
LGSNSPETLKVASPQIKAGSSNGKPQPVVAVSRANPADEQISYLAAYELVKNKRYDEAIKSMQTFVQKYPRGGYTANAEY
WLGELYLVKKDYSKAIEHFEIVLQQYPSSSKAAASLLKSGYAYAEKGDKQEAKKRFQQVVKTYPDTPTAQLASSKLEAIN
AL

Sequences:

>Translated_322_residues
MINCKKSIITLCFVLMLPFASWAEAPVIDDSENFAMIDRQEEYEAPLVNPKYDNPQIENAELDGSQNDNYSTDTSQSYDE
PALVKEDRSTISDNAKLIDKIQQLQKEIQELRGQLEVQAHDLKLLQQQQVAFYKDLDSRLSNSSTSAKTVQNDKPATDIS
LGSNSPETLKVASPQIKAGSSNGKPQPVVAVSRANPADEQISYLAAYELVKNKRYDEAIKSMQTFVQKYPRGGYTANAEY
WLGELYLVKKDYSKAIEHFEIVLQQYPSSSKAAASLLKSGYAYAEKGDKQEAKKRFQQVVKTYPDTPTAQLASSKLEAIN
AL
>Mature_322_residues
MINCKKSIITLCFVLMLPFASWAEAPVIDDSENFAMIDRQEEYEAPLVNPKYDNPQIENAELDGSQNDNYSTDTSQSYDE
PALVKEDRSTISDNAKLIDKIQQLQKEIQELRGQLEVQAHDLKLLQQQQVAFYKDLDSRLSNSSTSAKTVQNDKPATDIS
LGSNSPETLKVASPQIKAGSSNGKPQPVVAVSRANPADEQISYLAAYELVKNKRYDEAIKSMQTFVQKYPRGGYTANAEY
WLGELYLVKKDYSKAIEHFEIVLQQYPSSSKAAASLLKSGYAYAEKGDKQEAKKRFQQVVKTYPDTPTAQLASSKLEAIN
AL

Specific function: Unknown

COG id: COG1729

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786963, Length=217, Percent_Identity=33.1797235023041, Blast_Score=99, Evalue=4e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35972; Mature: 35972

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINCKKSIITLCFVLMLPFASWAEAPVIDDSENFAMIDRQEEYEAPLVNPKYDNPQIENA
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCHHHHCCCCCCCCCCCCCCCCC
ELDGSQNDNYSTDTSQSYDEPALVKEDRSTISDNAKLIDKIQQLQKEIQELRGQLEVQAH
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DLKLLQQQQVAFYKDLDSRLSNSSTSAKTVQNDKPATDISLGSNSPETLKVASPQIKAGS
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCEEECCCCCCCEEEECCCCEECCC
SNGKPQPVVAVSRANPADEQISYLAAYELVKNKRYDEAIKSMQTFVQKYPRGGYTANAEY
CCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCHH
WLGELYLVKKDYSKAIEHFEIVLQQYPSSSKAAASLLKSGYAYAEKGDKQEAKKRFQQVV
EEEEEEEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHH
KTYPDTPTAQLASSKLEAINAL
HHCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MINCKKSIITLCFVLMLPFASWAEAPVIDDSENFAMIDRQEEYEAPLVNPKYDNPQIENA
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCHHHHCCCCCCCCCCCCCCCCC
ELDGSQNDNYSTDTSQSYDEPALVKEDRSTISDNAKLIDKIQQLQKEIQELRGQLEVQAH
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DLKLLQQQQVAFYKDLDSRLSNSSTSAKTVQNDKPATDISLGSNSPETLKVASPQIKAGS
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCEEECCCCCCCEEEECCCCEECCC
SNGKPQPVVAVSRANPADEQISYLAAYELVKNKRYDEAIKSMQTFVQKYPRGGYTANAEY
CCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCHH
WLGELYLVKKDYSKAIEHFEIVLQQYPSSSKAAASLLKSGYAYAEKGDKQEAKKRFQQVV
EEEEEEEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHH
KTYPDTPTAQLASSKLEAINAL
HHCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1766377 [H]