Click here to switch to the map view.

The map label for this gene is 52841793

Identifier: 52841793

GI number: 52841793

Start: 1729478

End: 1730197

Strand: Reverse

Name: 52841793

Synonym: lpg1563

Alternate gene names: NA

Gene position: 1730197-1729478 (Counterclockwise)

Preceding gene: 52841794

Following gene: 52841787

Centisome position: 50.92

GC content: 33.19

Gene sequence:

>720_bases
ATGCTAGAAATGATTCATTTATTAATCAACTGGGTGAATTTAAAACTCACCATGCGAGCAAGTACCATCAATACTATTTT
ATTTCTTTTTTTAGGTGTTTGGGGGGATTTATCACATGCGACTAAATCAATCCACACAAATCAGGTAGATAGTCTGTTCA
ATATTGTTAAAATGAGCACTGTATTAAGCAAAGACAGTCTAATCTCTCCTTACAATTACTTACTTACACAGCCATTAATG
ACGACCACTTTGGAAAAGTACTATCAGCGCACCTCCAGGATTAAAGTAATTACTGCCTTTACAAATCCGCATAATAATAC
CTATTCTCGAATTATCATCCTGTATGTAGACCGAAATAAGAAAAGAAATAATGTAGAGCTCGCCCAAAAGAAAAATGAAA
TCATTCCAGTTGAATTAGCAGCTATTAACATTAATTTTGAAGAACTGCCGGAGAAACTTATTACTGATATAACTCACACC
AATATCCCTTTTGGAAAATTATTAACTCAATATCATCTGAAAGTTTTCAGTAAAGACCGTCGCTATTTCTCGGTTATTTG
CAACAACATGTTGGCTTCACTAATCCATTGCAAACCAAATAAAAAATTATATGGCCGTACCAATGTGCTTGCTAGAGTAG
ACAATAAAAAATGGGTTGCCCATGTTATTGAAATTTTATCTGATGAAAAAGAAGTCAAACATCGTTTAAGATTGAATTAA

Upstream 100 bases:

>100_bases
TTATCTGACTTAAAATACGGCATGGATCTGCTGCTTTCATCCTATAATCCCAATGGATGCTTTTGTTAGATAGGAATTTT
GTAGTTAATTATATAAGGTC

Downstream 100 bases:

>100_bases
ATAGCTTGTAATTTTTTCTTTCAGCCAAAAAACATATAGTTAGTTAAAAATCTATTTACCCAATTTTTTGCAACCAGCGA
ACTAACATTCGTGTTTTATT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MLEMIHLLINWVNLKLTMRASTINTILFLFLGVWGDLSHATKSIHTNQVDSLFNIVKMSTVLSKDSLISPYNYLLTQPLM
TTTLEKYYQRTSRIKVITAFTNPHNNTYSRIIILYVDRNKKRNNVELAQKKNEIIPVELAAININFEELPEKLITDITHT
NIPFGKLLTQYHLKVFSKDRRYFSVICNNMLASLIHCKPNKKLYGRTNVLARVDNKKWVAHVIEILSDEKEVKHRLRLN

Sequences:

>Translated_239_residues
MLEMIHLLINWVNLKLTMRASTINTILFLFLGVWGDLSHATKSIHTNQVDSLFNIVKMSTVLSKDSLISPYNYLLTQPLM
TTTLEKYYQRTSRIKVITAFTNPHNNTYSRIIILYVDRNKKRNNVELAQKKNEIIPVELAAININFEELPEKLITDITHT
NIPFGKLLTQYHLKVFSKDRRYFSVICNNMLASLIHCKPNKKLYGRTNVLARVDNKKWVAHVIEILSDEKEVKHRLRLN
>Mature_239_residues
MLEMIHLLINWVNLKLTMRASTINTILFLFLGVWGDLSHATKSIHTNQVDSLFNIVKMSTVLSKDSLISPYNYLLTQPLM
TTTLEKYYQRTSRIKVITAFTNPHNNTYSRIIILYVDRNKKRNNVELAQKKNEIIPVELAAININFEELPEKLITDITHT
NIPFGKLLTQYHLKVFSKDRRYFSVICNNMLASLIHCKPNKKLYGRTNVLARVDNKKWVAHVIEILSDEKEVKHRLRLN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27893; Mature: 27893

Theoretical pI: Translated: 10.33; Mature: 10.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEMIHLLINWVNLKLTMRASTINTILFLFLGVWGDLSHATKSIHTNQVDSLFNIVKMST
CHHHHHHHHHHHHEEEEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
VLSKDSLISPYNYLLTQPLMTTTLEKYYQRTSRIKVITAFTNPHNNTYSRIIILYVDRNK
HHCCCCCCCCHHHHHHCHHHHHHHHHHHHHHCCEEEEEEEECCCCCCEEEEEEEEEECCC
KRNNVELAQKKNEIIPVELAAININFEELPEKLITDITHTNIPFGKLLTQYHLKVFSKDR
CCCCCHHHHHCCCEEEEEEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCH
RYFSVICNNMLASLIHCKPNKKLYGRTNVLARVDNKKWVAHVIEILSDEKEVKHRLRLN
HHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHHHHHHHCCHHHHHHHHCCC
>Mature Secondary Structure
MLEMIHLLINWVNLKLTMRASTINTILFLFLGVWGDLSHATKSIHTNQVDSLFNIVKMST
CHHHHHHHHHHHHEEEEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
VLSKDSLISPYNYLLTQPLMTTTLEKYYQRTSRIKVITAFTNPHNNTYSRIIILYVDRNK
HHCCCCCCCCHHHHHHCHHHHHHHHHHHHHHCCEEEEEEEECCCCCCEEEEEEEEEECCC
KRNNVELAQKKNEIIPVELAAININFEELPEKLITDITHTNIPFGKLLTQYHLKVFSKDR
CCCCCHHHHHCCCEEEEEEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCH
RYFSVICNNMLASLIHCKPNKKLYGRTNVLARVDNKKWVAHVIEILSDEKEVKHRLRLN
HHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHHHHHHHCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA