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The map label for this gene is yiaD [H]

Identifier: 52840894

GI number: 52840894

Start: 705669

End: 706418

Strand: Reverse

Name: yiaD [H]

Synonym: lpg0657

Alternate gene names: 52840894

Gene position: 706418-705669 (Counterclockwise)

Preceding gene: 52840900

Following gene: 52840893

Centisome position: 20.79

GC content: 41.2

Gene sequence:

>750_bases
TTGCGAAATTTAATGAGATGCTTAATAATGATTAAATCATTGATTAAAGGAGTGGATATGTCACGCAAATTAGCCAAAAC
ACGAATCCTTGGTTATGGATTAATGATTTGCTTTCTTGCGGGCTGCTTTCATCCCCCTTATAACAACTTTCAACCCGATC
GACGAGCTGTTAAGAGAGTAGGAGTAGATACAGGGATTGGTGCTGTAGCTGGGGCAATCGCCAGTGGTACTGCTTCAGGA
ACTCTTATTGGGGCAGCGGCTGGTGGTACCGTAGGTCTGGTTGCGAGTATCTACCGTGACAGCAAACGCAAAATCATCAG
AGATCTGCAAAAGCAGGATATTCAGTATGTTGAATATGGAGATACCAGAACATTAATTATTCCTACAGACAAATATTTCA
TGTTTAGCAGCCCTCGCCTTAATGAAATATGCTATCCTGGCCTAAACAATGTCATCAGACTGTTAAATTTTTATCCTCAA
AGTACGATTTATGTTGCCGGATTTACTGATAATGTCGGATCACGTAGCCATAAGAGAAAACTTTCTCAAGCGCAAGCTGA
AACAATGATGACTTTTCTCTGGGCTAATGGTATTGCAGCCAAAAGACTAAAAGCAGAAGGCTATGGAGATAAGAATGCGA
TTTCTGACAATGCTATTATTCATGGAAGCGCCCAGAACAGAAGAATCGAGATCCAGTGGTTTACAAGCCCTGCTCAACCC
CCACAACCACAAATGGCTTATGTAAAATAA

Upstream 100 bases:

>100_bases
TCATTGTTAATAATTAAAGTTAACAATTAAAGAACAGCAATCTTGTAATCAATTGGCAATGGTATTTTTTATATGTCCTA
TAAAAATATAAACTGTTAGA

Downstream 100 bases:

>100_bases
AGGTTTATTAATGCGTTCAAGATTTATAGGCGGCATCTTATTGATAGTTGGTACCTCCATTGGTGGAGGGATGTTGGCTT
TACCAGTAGCTAATGCAGCA

Product: outer membrane protein, OmpA family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MRNLMRCLIMIKSLIKGVDMSRKLAKTRILGYGLMICFLAGCFHPPYNNFQPDRRAVKRVGVDTGIGAVAGAIASGTASG
TLIGAAAGGTVGLVASIYRDSKRKIIRDLQKQDIQYVEYGDTRTLIIPTDKYFMFSSPRLNEICYPGLNNVIRLLNFYPQ
STIYVAGFTDNVGSRSHKRKLSQAQAETMMTFLWANGIAAKRLKAEGYGDKNAISDNAIIHGSAQNRRIEIQWFTSPAQP
PQPQMAYVK

Sequences:

>Translated_249_residues
MRNLMRCLIMIKSLIKGVDMSRKLAKTRILGYGLMICFLAGCFHPPYNNFQPDRRAVKRVGVDTGIGAVAGAIASGTASG
TLIGAAAGGTVGLVASIYRDSKRKIIRDLQKQDIQYVEYGDTRTLIIPTDKYFMFSSPRLNEICYPGLNNVIRLLNFYPQ
STIYVAGFTDNVGSRSHKRKLSQAQAETMMTFLWANGIAAKRLKAEGYGDKNAISDNAIIHGSAQNRRIEIQWFTSPAQP
PQPQMAYVK
>Mature_249_residues
MRNLMRCLIMIKSLIKGVDMSRKLAKTRILGYGLMICFLAGCFHPPYNNFQPDRRAVKRVGVDTGIGAVAGAIASGTASG
TLIGAAAGGTVGLVASIYRDSKRKIIRDLQKQDIQYVEYGDTRTLIIPTDKYFMFSSPRLNEICYPGLNNVIRLLNFYPQ
STIYVAGFTDNVGSRSHKRKLSQAQAETMMTFLWANGIAAKRLKAEGYGDKNAISDNAIIHGSAQNRRIEIQWFTSPAQP
PQPQMAYVK

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=197, Percent_Identity=31.4720812182741, Blast_Score=79, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 27546; Mature: 27546

Theoretical pI: Translated: 10.42; Mature: 10.42

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNLMRCLIMIKSLIKGVDMSRKLAKTRILGYGLMICFLAGCFHPPYNNFQPDRRAVKRV
CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
GVDTGIGAVAGAIASGTASGTLIGAAAGGTVGLVASIYRDSKRKIIRDLQKQDIQYVEYG
CCCCCHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEC
DTRTLIIPTDKYFMFSSPRLNEICYPGLNNVIRLLNFYPQSTIYVAGFTDNVGSRSHKRK
CEEEEEEECCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHH
LSQAQAETMMTFLWANGIAAKRLKAEGYGDKNAISDNAIIHGSAQNRRIEIQWFTSPAQP
HHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCC
PQPQMAYVK
CCCCCCCCC
>Mature Secondary Structure
MRNLMRCLIMIKSLIKGVDMSRKLAKTRILGYGLMICFLAGCFHPPYNNFQPDRRAVKRV
CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
GVDTGIGAVAGAIASGTASGTLIGAAAGGTVGLVASIYRDSKRKIIRDLQKQDIQYVEYG
CCCCCHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEC
DTRTLIIPTDKYFMFSSPRLNEICYPGLNNVIRLLNFYPQSTIYVAGFTDNVGSRSHKRK
CEEEEEEECCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHH
LSQAQAETMMTFLWANGIAAKRLKAEGYGDKNAISDNAIIHGSAQNRRIEIQWFTSPAQP
HHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCC
PQPQMAYVK
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]