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The map label for this gene is capD [H]

Identifier: 39997344

GI number: 39997344

Start: 2461080

End: 2462090

Strand: Reverse

Name: capD [H]

Synonym: GSU2246

Alternate gene names: 39997344

Gene position: 2462090-2461080 (Counterclockwise)

Preceding gene: 39997345

Following gene: 39997343

Centisome position: 64.55

GC content: 50.15

Gene sequence:

>1011_bases
ATGTTCAGGAATAAAGTGCTGCTTATCACCGGTGGGACCGGTTCTTTCGGTAATGCCGTTCTGAAGCGTTTTCTCGACAC
ACGTATCAGTGAGGTGCGCATTTTCAGCCGCGATGAGAAGAAGCAGGAAGACATGCGCATTGCCCTGAACAATGACAGGC
TCAAGTTTTATATCGGCGACGTCAGAGATTATGACAGTCTTGACTCTGCAATGAAAGGTGTGGATTACGTTTTTCATGCG
GCAGCCCTCAAGCAGGTGCCATCATGTGAATTCTACCCTATGGAGGCTGTCAGGACGAACATCCTTGGTGCCGAGAACGT
CCTTAACGCTTCAATTGCAAACCATGTGAAAAAGGTAATCGTTCTGAGCACCGACAAGGCAGTATACCCGATAAATGCCA
TGGGACTGTCGAAAGCCATGATGGAAAAGCTGATGGTGGCAAAGTCGCGGACGACCGACATAACCAGAACGGTTCTTTGC
GCAACCCGCTACGGCAATGTAATGGCTTCACGCGGGTCGGTTATCCCCTTGTTTGTGCAACAAATCAAGGAAGGCAAGAG
CCTAACTCTCACGGACCCGAACATGACACGCTTCCTCATGTCTTTGGAGGATTCGGTTGATCTGGTCCTCTACGCATTTG
CTCACGCGAACTCGGGTGATATCCTCGTCCAGAAATCTCCGGCCTCTACCATCAGGGATCTTGCCCAGGCGTTGAAGGAA
TTGTTCAGCGCCGGTAACGAGATCAAGATCATCGGAACCCGGCATGGCGAGAAGCTCTACGAGACACTCGTGACGAGAGA
GGAGATGGTCAGGGCCGAGGATCTGGGAACGTATTACCGCATCCCGTCAGACAGCCGCGATTTGAACTACAATAAGTATT
TCGTCGAGGGGGAAGAAAAAATATCGCTCAAGGACGACTACACTTCGCACAACACTACGAGATTGGATGTTGAAGGGGTT
AAAGAGCTGCTCCTCAAGCTTGACTATATTAGAGGCGAACTCAATGCTTAA

Upstream 100 bases:

>100_bases
TATAGCGCGCCCGCATGGCCGGAACTGATTGCGGAAATGCACAACGACTACGTGACATCACCATGGTATCGACATAAATT
GCGGGAGGGGAGCCATTAGG

Downstream 100 bases:

>100_bases
AGTCATGACTATAGTCGGCACCAGGCCGGAGATCATCAAGCTTTGCCGCGTGATAGGTGAGCTTGAACAGCACGCAAACC
ATGTACTGGTTCATACTGGT

Product: polysaccharide biosynthesis domain-containing protein

Products: NA

Alternate protein names: Galactowaldenase; UDP-galactose 4-epimerase [H]

Number of amino acids: Translated: 336; Mature: 336

Protein sequence:

>336_residues
MFRNKVLLITGGTGSFGNAVLKRFLDTRISEVRIFSRDEKKQEDMRIALNNDRLKFYIGDVRDYDSLDSAMKGVDYVFHA
AALKQVPSCEFYPMEAVRTNILGAENVLNASIANHVKKVIVLSTDKAVYPINAMGLSKAMMEKLMVAKSRTTDITRTVLC
ATRYGNVMASRGSVIPLFVQQIKEGKSLTLTDPNMTRFLMSLEDSVDLVLYAFAHANSGDILVQKSPASTIRDLAQALKE
LFSAGNEIKIIGTRHGEKLYETLVTREEMVRAEDLGTYYRIPSDSRDLNYNKYFVEGEEKISLKDDYTSHNTTRLDVEGV
KELLLKLDYIRGELNA

Sequences:

>Translated_336_residues
MFRNKVLLITGGTGSFGNAVLKRFLDTRISEVRIFSRDEKKQEDMRIALNNDRLKFYIGDVRDYDSLDSAMKGVDYVFHA
AALKQVPSCEFYPMEAVRTNILGAENVLNASIANHVKKVIVLSTDKAVYPINAMGLSKAMMEKLMVAKSRTTDITRTVLC
ATRYGNVMASRGSVIPLFVQQIKEGKSLTLTDPNMTRFLMSLEDSVDLVLYAFAHANSGDILVQKSPASTIRDLAQALKE
LFSAGNEIKIIGTRHGEKLYETLVTREEMVRAEDLGTYYRIPSDSRDLNYNKYFVEGEEKISLKDDYTSHNTTRLDVEGV
KELLLKLDYIRGELNA
>Mature_336_residues
MFRNKVLLITGGTGSFGNAVLKRFLDTRISEVRIFSRDEKKQEDMRIALNNDRLKFYIGDVRDYDSLDSAMKGVDYVFHA
AALKQVPSCEFYPMEAVRTNILGAENVLNASIANHVKKVIVLSTDKAVYPINAMGLSKAMMEKLMVAKSRTTDITRTVLC
ATRYGNVMASRGSVIPLFVQQIKEGKSLTLTDPNMTRFLMSLEDSVDLVLYAFAHANSGDILVQKSPASTIRDLAQALKE
LFSAGNEIKIIGTRHGEKLYETLVTREEMVRAEDLGTYYRIPSDSRDLNYNKYFVEGEEKISLKDDYTSHNTTRLDVEGV
KELLLKLDYIRGELNA

Specific function: Epimerizes UDP-galactose to UDP-glucose [H]

COG id: COG1086

COG function: function code MG; Predicted nucleoside-diphosphate sugar epimerases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR003869
- InterPro:   IPR013692 [H]

Pfam domain/function: PF08485 Polysacc_syn_2C; PF02719 Polysacc_synt_2 [H]

EC number: =5.1.3.2 [H]

Molecular weight: Translated: 37825; Mature: 37825

Theoretical pI: Translated: 8.16; Mature: 8.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFRNKVLLITGGTGSFGNAVLKRFLDTRISEVRIFSRDEKKQEDMRIALNNDRLKFYIGD
CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHEEEECCCCCCCCCEEEEECCCEEEEEECC
VRDYDSLDSAMKGVDYVFHAAALKQVPSCEFYPMEAVRTNILGAENVLNASIANHVKKVI
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHEEE
VLSTDKAVYPINAMGLSKAMMEKLMVAKSRTTDITRTVLCATRYGNVMASRGSVIPLFVQ
EEECCCCEEEECHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHCCCCCHHHHHH
QIKEGKSLTLTDPNMTRFLMSLEDSVDLVLYAFAHANSGDILVQKSPASTIRDLAQALKE
HHHCCCEEEEECCHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCHHHHHHHHHHHHH
LFSAGNEIKIIGTRHGEKLYETLVTREEMVRAEDLGTYYRIPSDSRDLNYNKYFVEGEEK
HHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCEEEECCCCE
ISLKDDYTSHNTTRLDVEGVKELLLKLDYIRGELNA
EEECCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MFRNKVLLITGGTGSFGNAVLKRFLDTRISEVRIFSRDEKKQEDMRIALNNDRLKFYIGD
CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHEEEECCCCCCCCCEEEEECCCEEEEEECC
VRDYDSLDSAMKGVDYVFHAAALKQVPSCEFYPMEAVRTNILGAENVLNASIANHVKKVI
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHEEE
VLSTDKAVYPINAMGLSKAMMEKLMVAKSRTTDITRTVLCATRYGNVMASRGSVIPLFVQ
EEECCCCEEEECHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHCCCCCHHHHHH
QIKEGKSLTLTDPNMTRFLMSLEDSVDLVLYAFAHANSGDILVQKSPASTIRDLAQALKE
HHHCCCEEEEECCHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCHHHHHHHHHHHHH
LFSAGNEIKIIGTRHGEKLYETLVTREEMVRAEDLGTYYRIPSDSRDLNYNKYFVEGEEK
HHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCEEEECCCCE
ISLKDDYTSHNTTRLDVEGVKELLLKLDYIRGELNA
EEECCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA