| Definition | Geobacter sulfurreducens PCA chromosome, complete genome. |
|---|---|
| Accession | NC_002939 |
| Length | 3,814,139 |
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The map label for this gene is cas3 [H]
Identifier: 39996486
GI number: 39996486
Start: 1512324
End: 1514975
Strand: Direct
Name: cas3 [H]
Synonym: GSU1384
Alternate gene names: 39996486
Gene position: 1512324-1514975 (Clockwise)
Preceding gene: 39996485
Following gene: 39996487
Centisome position: 39.65
GC content: 56.41
Gene sequence:
>2652_bases ATGGAAAGTCTTACTGTCCCGGAGTATGTTTGGTATTGGGGGAAGGCTGAGAAGGATGCAGGCGGTTACCATCTCTTGCC GTACCATTGCCTCGACGTCGCGGCTGTGGCCGCAGTCTGGTGGGATGCGAGTCCGACTATCCGGCGCAGCTTCTCCAGTC ATGCGAGTTGCTCCGAGGTTCAGAGCCGCGCCTGGCTGCTCTTCTTTGTCGCATTGCACGATTATGGCAAATTCGATCTG CGCTTCCAACTGAAGGTCAGGGAGGTGTGGGAGAAGCTGCATCCGTTGGCAGGTCAGGGGGCAAGCCTGCCTTCGCAATT TGACATCAACCAATACCAGCACGGCGAGAGCGGCCTCTTCTGGTTCAAGAAAGATTTTTTCGCCTTAAACGGATGCGAGC CCACTGCTGATTCACTTTTTATCGACGATGAACCGCTCCAGTGGTCGAACTGGAAACCGTGGGTCGAAGCGGTGACGGGT CATCATGGCCATGTGAAACAGGCGGAATATGCAAGTGATGCGTCTCTTTCTGTTTCGGTCGACGGCAGATTCGCCGAGAT CGATCAAACAGCCCGGAAAGAGTGGCTAAAAGCATTGGAGCAACTTTTCCTGCGACCGGCCGGCCTTTCCCTCGATAACG CTCCGCCTCCTCCATCGCCGCTACTGGCCGGATTCTGTTCCGTGTCAGACTGGCTGGCTTCCCGTTGCGACGACACCAAT TTCTCCTTCCATCAGTCACCGCTGTCAATCTCGGACTATTTCACACAAAAATTCTCACAGGACGCTCCTGCCATCCTTGC TTTCTCCGGGCTTAACGGCACAGCCAAGAGCTACGGTGGCATATCCGACCTTCTCCCTGCCATCGCAACGCCTCGTCCAC TGCAAACCAAGGTCGATCAGTTACCGCTTCAGGACGGTTTGACCATCATTGAAGCACCGACCGGATCAGGCAAGACCGAA GCTGCCCTTGCCCATGCCTGGCGGTTGCTGGCTACCGGGCAAGCCGATTCGATCATCTTCGCGCTCCCCACGCAGGCCAC TGCCAACGCCATGCTGGGCCGACTTGAATCGCTGGCTGAACGTATTTTTACCAACAGCCCGAACCTCTTACTGGCCCATG GCAATGCCCGGTTCAACCGGACCTTCACGGACCTCAAGCGCAGAGGGTATAGCGACGTCGCCGACCCGGACGGCTGGACA CAATGTGGGGAATGGCTGGCGGAGAGTCGCAAGCGGGTTTTTCTCGGACAGATCGGAGTCTGCACCATCGATCAGGTCCT GATTTCCGTATTGCCGGTCAAACATCGCTTCGTGCGTGGCCTTGGGGTGGGACGAAGCGTGCTGATCGTGGATGAGGTGC ATGCCTACGACGCCTACATGTACGGCCTGCTTGAAGAAGTCTTGCGTCAGCAGCGCCAGTGCGGCGGCTCGGCCATCCTG TTATCGGCCACCCTGCCCGCAACGCTGAAGCAACAACTCGCAGCGGCCTGGGGAGACCAACGCACCGAATGCAACCCATC GGCAGCCTATCCGTTGTTGACTTGGCTCGGAAATGTGGATTTCCCGCCTATTTCGTTGGCTCGCCATGAAACGCCAAAAC CGGTCACGGTTGAAATTGAAGCCCTGCGGCTTGAGGGAATGGAACCAGACCAGACCTTGCTCGCTCGCCTTGTCAGGGCT GCAGAGAGTGGCGCGCAGGTTGCGGTGATCTGCAATATGGTCAACGATGCCCAGAGAATCGCCGCTGCCCTGAGAGAGAT GACATCCGCTCCGGTCGGCCTCTTTCATGCGCGTTACCGCTTCAAGGATCGGCAAATCAGAGAAAGCGAGGTCATCGACT GTTTCGGTCCCAGCGGCAAACGCGAACAGGGACGCATTCTGGTTGCCACTCAAGTTGTCGAGCAATCTCTCGATCTGGAT TTCGATTGGCTGGTCACCCAGTTGTGCCCGGTCGACCTCCTCTTTCAGCGCATGGGGAGACTGCATCGTCATCCACGCGC ATCGCGACCTGCTGGGTATGACAAGCCAGTCTGCACTATCCTTCTCCCGTGCGAATGCAATTACGGCTACACCGGGAAAA TCTATGCGGATACCCGAGTGCTTTGGCGCACCGAACAGTTGTTGGCTTCCGCATCCGCCGGTCAGGTTACGTTCCCGGCT GCCTATCGGGAATGGATCGAGAGTGCCTATCAAGAGAAGTCTTGGGGTACAGAGCCAGATTTGGTGATTGCAGGGTTCGA GAAGTTCAAGGACAAAACCTGGAGTAAGACTTATAGCGCCAAGGAGATGATTCGGAAGGCATTTGAAATCACCCCCTTTT CGGATTCAGATGAAAATGTCACCGCCGTTACCCGTGACGATGAAATGGGGCTGACGGTGATCCCGGTCATCGATTCGCCA AAGGGGCGGCGCTTCCTCGATGGTGGATTGCTTGGTGATCTGGATGAATTCCGCAGGGCAGAGGAGTTGGCTCTCAACAG TATCAATGTCCCTGCGCGCTGGAGTGGTTGGCTGAAAGCGTTGTGCGAAATTGACGACGAAAGACGATACTGGCTCACCA TGACGGAACAAGGAGAGGGGTGCTATGTGCGTGAAGGGGAAAAGGTTGCTTTCAGGTATCACTGCGATACCGGACTGGAG AGGGTGAAATGA
Upstream 100 bases:
>100_bases AAAGTGGTGCTCTGCGGTAGTTGTGACTTGATTTGTCATAATGACATGATACTAACTGAACGCGATGATGGTGGCTTGCT TGGTTGCGTTGGAGGGGGAA
Downstream 100 bases:
>100_bases ATCTGCTGACCGAAGCATGGATACCTGTGCGGCCATTACCGGCCGGTGCGGCGTGCAAACTCACGTTGCGGCAACTGTTG TGCGAGGACGGCCGATGGGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 883; Mature: 883
Protein sequence:
>883_residues MESLTVPEYVWYWGKAEKDAGGYHLLPYHCLDVAAVAAVWWDASPTIRRSFSSHASCSEVQSRAWLLFFVALHDYGKFDL RFQLKVREVWEKLHPLAGQGASLPSQFDINQYQHGESGLFWFKKDFFALNGCEPTADSLFIDDEPLQWSNWKPWVEAVTG HHGHVKQAEYASDASLSVSVDGRFAEIDQTARKEWLKALEQLFLRPAGLSLDNAPPPPSPLLAGFCSVSDWLASRCDDTN FSFHQSPLSISDYFTQKFSQDAPAILAFSGLNGTAKSYGGISDLLPAIATPRPLQTKVDQLPLQDGLTIIEAPTGSGKTE AALAHAWRLLATGQADSIIFALPTQATANAMLGRLESLAERIFTNSPNLLLAHGNARFNRTFTDLKRRGYSDVADPDGWT QCGEWLAESRKRVFLGQIGVCTIDQVLISVLPVKHRFVRGLGVGRSVLIVDEVHAYDAYMYGLLEEVLRQQRQCGGSAIL LSATLPATLKQQLAAAWGDQRTECNPSAAYPLLTWLGNVDFPPISLARHETPKPVTVEIEALRLEGMEPDQTLLARLVRA AESGAQVAVICNMVNDAQRIAAALREMTSAPVGLFHARYRFKDRQIRESEVIDCFGPSGKREQGRILVATQVVEQSLDLD FDWLVTQLCPVDLLFQRMGRLHRHPRASRPAGYDKPVCTILLPCECNYGYTGKIYADTRVLWRTEQLLASASAGQVTFPA AYREWIESAYQEKSWGTEPDLVIAGFEKFKDKTWSKTYSAKEMIRKAFEITPFSDSDENVTAVTRDDEMGLTVIPVIDSP KGRRFLDGGLLGDLDEFRRAEELALNSINVPARWSGWLKALCEIDDERRYWLTMTEQGEGCYVREGEKVAFRYHCDTGLE RVK
Sequences:
>Translated_883_residues MESLTVPEYVWYWGKAEKDAGGYHLLPYHCLDVAAVAAVWWDASPTIRRSFSSHASCSEVQSRAWLLFFVALHDYGKFDL RFQLKVREVWEKLHPLAGQGASLPSQFDINQYQHGESGLFWFKKDFFALNGCEPTADSLFIDDEPLQWSNWKPWVEAVTG HHGHVKQAEYASDASLSVSVDGRFAEIDQTARKEWLKALEQLFLRPAGLSLDNAPPPPSPLLAGFCSVSDWLASRCDDTN FSFHQSPLSISDYFTQKFSQDAPAILAFSGLNGTAKSYGGISDLLPAIATPRPLQTKVDQLPLQDGLTIIEAPTGSGKTE AALAHAWRLLATGQADSIIFALPTQATANAMLGRLESLAERIFTNSPNLLLAHGNARFNRTFTDLKRRGYSDVADPDGWT QCGEWLAESRKRVFLGQIGVCTIDQVLISVLPVKHRFVRGLGVGRSVLIVDEVHAYDAYMYGLLEEVLRQQRQCGGSAIL LSATLPATLKQQLAAAWGDQRTECNPSAAYPLLTWLGNVDFPPISLARHETPKPVTVEIEALRLEGMEPDQTLLARLVRA AESGAQVAVICNMVNDAQRIAAALREMTSAPVGLFHARYRFKDRQIRESEVIDCFGPSGKREQGRILVATQVVEQSLDLD FDWLVTQLCPVDLLFQRMGRLHRHPRASRPAGYDKPVCTILLPCECNYGYTGKIYADTRVLWRTEQLLASASAGQVTFPA AYREWIESAYQEKSWGTEPDLVIAGFEKFKDKTWSKTYSAKEMIRKAFEITPFSDSDENVTAVTRDDEMGLTVIPVIDSP KGRRFLDGGLLGDLDEFRRAEELALNSINVPARWSGWLKALCEIDDERRYWLTMTEQGEGCYVREGEKVAFRYHCDTGLE RVK >Mature_883_residues MESLTVPEYVWYWGKAEKDAGGYHLLPYHCLDVAAVAAVWWDASPTIRRSFSSHASCSEVQSRAWLLFFVALHDYGKFDL RFQLKVREVWEKLHPLAGQGASLPSQFDINQYQHGESGLFWFKKDFFALNGCEPTADSLFIDDEPLQWSNWKPWVEAVTG HHGHVKQAEYASDASLSVSVDGRFAEIDQTARKEWLKALEQLFLRPAGLSLDNAPPPPSPLLAGFCSVSDWLASRCDDTN FSFHQSPLSISDYFTQKFSQDAPAILAFSGLNGTAKSYGGISDLLPAIATPRPLQTKVDQLPLQDGLTIIEAPTGSGKTE AALAHAWRLLATGQADSIIFALPTQATANAMLGRLESLAERIFTNSPNLLLAHGNARFNRTFTDLKRRGYSDVADPDGWT QCGEWLAESRKRVFLGQIGVCTIDQVLISVLPVKHRFVRGLGVGRSVLIVDEVHAYDAYMYGLLEEVLRQQRQCGGSAIL LSATLPATLKQQLAAAWGDQRTECNPSAAYPLLTWLGNVDFPPISLARHETPKPVTVEIEALRLEGMEPDQTLLARLVRA AESGAQVAVICNMVNDAQRIAAALREMTSAPVGLFHARYRFKDRQIRESEVIDCFGPSGKREQGRILVATQVVEQSLDLD FDWLVTQLCPVDLLFQRMGRLHRHPRASRPAGYDKPVCTILLPCECNYGYTGKIYADTRVLWRTEQLLASASAGQVTFPA AYREWIESAYQEKSWGTEPDLVIAGFEKFKDKTWSKTYSAKEMIRKAFEITPFSDSDENVTAVTRDDEMGLTVIPVIDSP KGRRFLDGGLLGDLDEFRRAEELALNSINVPARWSGWLKALCEIDDERRYWLTMTEQGEGCYVREGEKVAFRYHCDTGLE RVK
Specific function: Unknown
COG id: COG1203
COG function: function code R; Predicted helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1789119, Length=885, Percent_Identity=47.4576271186441, Blast_Score=783, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006483 - InterPro: IPR014001 - InterPro: IPR011545 - InterPro: IPR001650 - InterPro: IPR006474 - InterPro: IPR014021 [H]
Pfam domain/function: PF00270 DEAD [H]
EC number: NA
Molecular weight: Translated: 98692; Mature: 98692
Theoretical pI: Translated: 5.66; Mature: 5.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MESLTVPEYVWYWGKAEKDAGGYHLLPYHCLDVAAVAAVWWDASPTIRRSFSSHASCSEV CCCCCCCHHHEEECCCCCCCCCEEECHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHH QSRAWLLFFVALHDYGKFDLRFQLKVREVWEKLHPLAGQGASLPSQFDINQYQHGESGLF HHHHHHHHEEEHHCCCCEEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCEE WFKKDFFALNGCEPTADSLFIDDEPLQWSNWKPWVEAVTGHHGHVKQAEYASDASLSVSV EEEECEEEECCCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCCCHHCCCCCEEEEEE DGRFAEIDQTARKEWLKALEQLFLRPAGLSLDNAPPPPSPLLAGFCSVSDWLASRCDDTN CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC FSFHQSPLSISDYFTQKFSQDAPAILAFSGLNGTAKSYGGISDLLPAIATPRPLQTKVDQ CCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCHHHCCCHHHHHHHHCCCCCCHHHHHH LPLQDGLTIIEAPTGSGKTEAALAHAWRLLATGQADSIIFALPTQATANAMLGRLESLAE CCHHCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHH RIFTNSPNLLLAHGNARFNRTFTDLKRRGYSDVADPDGWTQCGEWLAESRKRVFLGQIGV HHHCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCH CTIDQVLISVLPVKHRFVRGLGVGRSVLIVDEVHAYDAYMYGLLEEVLRQQRQCGGSAIL HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCEEE LSATLPATLKQQLAAAWGDQRTECNPSAAYPLLTWLGNVDFPPISLARHETPKPVTVEIE EEECCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHCCCCCCCEEEEEE ALRLEGMEPDQTLLARLVRAAESGAQVAVICNMVNDAQRIAAALREMTSAPVGLFHARYR EEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHHHHCCCHHHHHHHHH FKDRQIRESEVIDCFGPSGKREQGRILVATQVVEQSLDLDFDWLVTQLCPVDLLFQRMGR CCCCCCCHHCEEEECCCCCCCCCCCEEEEHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHH LHRHPRASRPAGYDKPVCTILLPCECNYGYTGKIYADTRVLWRTEQLLASASAGQVTFPA HHCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEECCCHHHHHHHHHHCCCCCCEECCH AYREWIESAYQEKSWGTEPDLVIAGFEKFKDKTWSKTYSAKEMIRKAFEITPFSDSDENV HHHHHHHHHHHHCCCCCCCCEEEECHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCE TAVTRDDEMGLTVIPVIDSPKGRRFLDGGLLGDLDEFRRAEELALNSINVPARWSGWLKA EEEEECCCCCEEEEEEECCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHH LCEIDDERRYWLTMTEQGEGCYVREGEKVAFRYHCDTGLERVK HHCCCCCCEEEEEEEECCCCCEEECCCEEEEEEECCCHHHHCC >Mature Secondary Structure MESLTVPEYVWYWGKAEKDAGGYHLLPYHCLDVAAVAAVWWDASPTIRRSFSSHASCSEV CCCCCCCHHHEEECCCCCCCCCEEECHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHH QSRAWLLFFVALHDYGKFDLRFQLKVREVWEKLHPLAGQGASLPSQFDINQYQHGESGLF HHHHHHHHEEEHHCCCCEEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCEE WFKKDFFALNGCEPTADSLFIDDEPLQWSNWKPWVEAVTGHHGHVKQAEYASDASLSVSV EEEECEEEECCCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCCCHHCCCCCEEEEEE DGRFAEIDQTARKEWLKALEQLFLRPAGLSLDNAPPPPSPLLAGFCSVSDWLASRCDDTN CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC FSFHQSPLSISDYFTQKFSQDAPAILAFSGLNGTAKSYGGISDLLPAIATPRPLQTKVDQ CCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCHHHCCCHHHHHHHHCCCCCCHHHHHH LPLQDGLTIIEAPTGSGKTEAALAHAWRLLATGQADSIIFALPTQATANAMLGRLESLAE CCHHCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHH RIFTNSPNLLLAHGNARFNRTFTDLKRRGYSDVADPDGWTQCGEWLAESRKRVFLGQIGV HHHCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCH CTIDQVLISVLPVKHRFVRGLGVGRSVLIVDEVHAYDAYMYGLLEEVLRQQRQCGGSAIL HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCEEE LSATLPATLKQQLAAAWGDQRTECNPSAAYPLLTWLGNVDFPPISLARHETPKPVTVEIE EEECCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHCCCCCCCEEEEEE ALRLEGMEPDQTLLARLVRAAESGAQVAVICNMVNDAQRIAAALREMTSAPVGLFHARYR EEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHHHHCCCHHHHHHHHH FKDRQIRESEVIDCFGPSGKREQGRILVATQVVEQSLDLDFDWLVTQLCPVDLLFQRMGR CCCCCCCHHCEEEECCCCCCCCCCCEEEEHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHH LHRHPRASRPAGYDKPVCTILLPCECNYGYTGKIYADTRVLWRTEQLLASASAGQVTFPA HHCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEECCCHHHHHHHHHHCCCCCCEECCH AYREWIESAYQEKSWGTEPDLVIAGFEKFKDKTWSKTYSAKEMIRKAFEITPFSDSDENV HHHHHHHHHHHHCCCCCCCCEEEECHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCE TAVTRDDEMGLTVIPVIDSPKGRRFLDGGLLGDLDEFRRAEELALNSINVPARWSGWLKA EEEEECCCCCEEEEEEECCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHH LCEIDDERRYWLTMTEQGEGCYVREGEKVAFRYHCDTGLERVK HHCCCCCCEEEEEEEECCCCCEEECCCEEEEEEECCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9278503; 2005873; 7984428 [H]