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The map label for this gene is ygcL [H]

Identifier: 39996487

GI number: 39996487

Start: 1514972

End: 1516492

Strand: Direct

Name: ygcL [H]

Synonym: GSU1385

Alternate gene names: 39996487

Gene position: 1514972-1516492 (Clockwise)

Preceding gene: 39996486

Following gene: 39996488

Centisome position: 39.72

GC content: 56.87

Gene sequence:

>1521_bases
ATGAATCTGCTGACCGAAGCATGGATACCTGTGCGGCCATTACCGGCCGGTGCGGCGTGCAAACTCACGTTGCGGCAACT
GTTGTGCGAGGACGGCCGATGGGAGCTGTGCCTACCGCGCGACGACATGGAACTGGCAGCCCTGCAATTGCTGATCTGCA
TGACGCAGGTTTTCTTTCCGCCGCAGAGCACTGCCGCGTTGAAACAGCGGATAGTTGCTCCGTTGTCGTTGGATGAGTTT
GAGAGCGGTTGTGCGCCCTATCGCGAGTGGTTCCGGCTCGACCATCCCGACTTTCCGTTCATGCAGGTGCGCAACGTCAG
CGCCAAGGACCCGACTCCCATGGATAAGTTGCTGGCGGGACTGACGGGGGCGACAAACAGTTGCTTTGTGAACGAACCGG
GGTTGGGCGCCTGCTTGTGCGGTGGCTGCGCGGCCATCGCCCTGTTCAACCAGTCATCCAATGCGCCGAGTTTTGGCGGC
GGGTTCAAGGGGAGTCTGCGCGGTGGAGCGCCGGTGACAACTCTGGTGCAAGGTGAACATTTGAGGCAAACCGTCTGGCT
CAATGTCTTGAGTGAAGAGCGTCTGACACAAATTATCCCGTGGCATCACGCAACACGCAGTCAGCAACCGACCTGGGTTG
CACCAATCAAGGCGGGCGAGACAATTCCATCACAAGCAATCGGCGTACTGCGCGGGCTCTTCTGGCAGCCGGGACATCTT
GAACTGATGCCGCCGCAGGGAGAACAAGCTTGTATCTGTTGCGGTTTTGTCGAGAAACAGGTTTATGCGGGATTCAACAA
GGCAAAGTTTAACTACACCATCGACGGACTCTGGCCCCACCCCCACGGCCCCCGTATCAGTTCGGTGAAGAAGGGAGAGC
GGGAAGAAAAATTTGTTTCCTTCACCACCGCAGCCCCGGCTTGGACCCATTTGAGCCGGTTTGTCGTGCAGCGGCAAACG
ACCAACAGTAAAGAGGAAGGTCAGGAGCCGGCCGCGGTGGTGCGGCAGGCGCAGGGACTACTCAATAAGTTACGCCTGGC
AGTCGGTGGCTACCGCAACAATCAGGCATCGATTCTTGAGCGGCGCCACGAACTGATTTTTCTCAATGACGGCTGGAGCG
GGCATACAGAGGTGGTGCATGCGCTGGTCGGACAGGCGGTCGGGTATCGCGATGCACTGAATAAGGCGCTTTTTGTATTT
TCCACGGGCTTCAAAGAGATCAAGGGAGCCGGCGTTAAGGTTCATGAATTGGCTAAGGAGCAATTCTACCGCCGTAGTGA
AGATACGGTTCTCGATACCTTGGCACGCATCGACTTTGAACAAGCAGCCCTGGCATTGCTGGCAATGGGGGATGGGCTCC
ACGGTATTGTCGTTGGGCTTTTTAATGAGTCGGTCGCACCCTACCGCAACGATCCGGAATTAATCCGTACCACAGCCGTG
GCGCGTAAGACACTGTACAAGCATTTAAATGCACTCAAACCACAACGGGATGGAAGGAGGGACGATGGAACGAACGCATG
A

Upstream 100 bases:

>100_bases
ACTGGCTCACCATGACGGAACAAGGAGAGGGGTGCTATGTGCGTGAAGGGGAAAAGGTTGCTTTCAGGTATCACTGCGAT
ACCGGACTGGAGAGGGTGAA

Downstream 100 bases:

>100_bases
TTTCATGGGCCTCTATCAGGCATGGGAGCGGCTGGCTCCGGGCCCGAGAGCCGAGTTGCGCCGAGTCGAACGCCCGGACG
ATCTACTGGAAGTGCCGGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 506; Mature: 506

Protein sequence:

>506_residues
MNLLTEAWIPVRPLPAGAACKLTLRQLLCEDGRWELCLPRDDMELAALQLLICMTQVFFPPQSTAALKQRIVAPLSLDEF
ESGCAPYREWFRLDHPDFPFMQVRNVSAKDPTPMDKLLAGLTGATNSCFVNEPGLGACLCGGCAAIALFNQSSNAPSFGG
GFKGSLRGGAPVTTLVQGEHLRQTVWLNVLSEERLTQIIPWHHATRSQQPTWVAPIKAGETIPSQAIGVLRGLFWQPGHL
ELMPPQGEQACICCGFVEKQVYAGFNKAKFNYTIDGLWPHPHGPRISSVKKGEREEKFVSFTTAAPAWTHLSRFVVQRQT
TNSKEEGQEPAAVVRQAQGLLNKLRLAVGGYRNNQASILERRHELIFLNDGWSGHTEVVHALVGQAVGYRDALNKALFVF
STGFKEIKGAGVKVHELAKEQFYRRSEDTVLDTLARIDFEQAALALLAMGDGLHGIVVGLFNESVAPYRNDPELIRTTAV
ARKTLYKHLNALKPQRDGRRDDGTNA

Sequences:

>Translated_506_residues
MNLLTEAWIPVRPLPAGAACKLTLRQLLCEDGRWELCLPRDDMELAALQLLICMTQVFFPPQSTAALKQRIVAPLSLDEF
ESGCAPYREWFRLDHPDFPFMQVRNVSAKDPTPMDKLLAGLTGATNSCFVNEPGLGACLCGGCAAIALFNQSSNAPSFGG
GFKGSLRGGAPVTTLVQGEHLRQTVWLNVLSEERLTQIIPWHHATRSQQPTWVAPIKAGETIPSQAIGVLRGLFWQPGHL
ELMPPQGEQACICCGFVEKQVYAGFNKAKFNYTIDGLWPHPHGPRISSVKKGEREEKFVSFTTAAPAWTHLSRFVVQRQT
TNSKEEGQEPAAVVRQAQGLLNKLRLAVGGYRNNQASILERRHELIFLNDGWSGHTEVVHALVGQAVGYRDALNKALFVF
STGFKEIKGAGVKVHELAKEQFYRRSEDTVLDTLARIDFEQAALALLAMGDGLHGIVVGLFNESVAPYRNDPELIRTTAV
ARKTLYKHLNALKPQRDGRRDDGTNA
>Mature_506_residues
MNLLTEAWIPVRPLPAGAACKLTLRQLLCEDGRWELCLPRDDMELAALQLLICMTQVFFPPQSTAALKQRIVAPLSLDEF
ESGCAPYREWFRLDHPDFPFMQVRNVSAKDPTPMDKLLAGLTGATNSCFVNEPGLGACLCGGCAAIALFNQSSNAPSFGG
GFKGSLRGGAPVTTLVQGEHLRQTVWLNVLSEERLTQIIPWHHATRSQQPTWVAPIKAGETIPSQAIGVLRGLFWQPGHL
ELMPPQGEQACICCGFVEKQVYAGFNKAKFNYTIDGLWPHPHGPRISSVKKGEREEKFVSFTTAAPAWTHLSRFVVQRQT
TNSKEEGQEPAAVVRQAQGLLNKLRLAVGGYRNNQASILERRHELIFLNDGWSGHTEVVHALVGQAVGYRDALNKALFVF
STGFKEIKGAGVKVHELAKEQFYRRSEDTVLDTLARIDFEQAALALLAMGDGLHGIVVGLFNESVAPYRNDPELIRTTAV
ARKTLYKHLNALKPQRDGRRDDGTNA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789118, Length=499, Percent_Identity=52.7054108216433, Blast_Score=530, Evalue=1e-152,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013381 [H]

Pfam domain/function: PF09481 CRISPR_Cse1 [H]

EC number: NA

Molecular weight: Translated: 55855; Mature: 55855

Theoretical pI: Translated: 8.18; Mature: 8.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLLTEAWIPVRPLPAGAACKLTLRQLLCEDGRWELCLPRDDMELAALQLLICMTQVFFP
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCC
PQSTAALKQRIVAPLSLDEFESGCAPYREWFRLDHPDFPFMQVRNVSAKDPTPMDKLLAG
CCHHHHHHHHHCCCCCHHHHHCCCHHHHHHHCCCCCCCCHHHCCCCCCCCCCCHHHHHHH
LTGATNSCFVNEPGLGACLCGGCAAIALFNQSSNAPSFGGGFKGSLRGGAPVTTLVQGEH
HCCCCCCEEECCCCCCHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCHH
LRQTVWLNVLSEERLTQIIPWHHATRSQQPTWVAPIKAGETIPSQAIGVLRGLFWQPGHL
HHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCE
ELMPPQGEQACICCGFVEKQVYAGFNKAKFNYTIDGLWPHPHGPRISSVKKGEREEKFVS
EEECCCCCCEEEEEHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCHHHCCCCHHHEEE
FTTAAPAWTHLSRFVVQRQTTNSKEEGQEPAAVVRQAQGLLNKLRLAVGGYRNNQASILE
EECCCCHHHHHHHHHHHHHCCCCHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
RRHELIFLNDGWSGHTEVVHALVGQAVGYRDALNKALFVFSTGFKEIKGAGVKVHELAKE
CCCCEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHEEEEEECCHHHHCCCCCHHHHHHHH
QFYRRSEDTVLDTLARIDFEQAALALLAMGDGLHGIVVGLFNESVAPYRNDPELIRTTAV
HHHHCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHH
ARKTLYKHLNALKPQRDGRRDDGTNA
HHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNLLTEAWIPVRPLPAGAACKLTLRQLLCEDGRWELCLPRDDMELAALQLLICMTQVFFP
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCC
PQSTAALKQRIVAPLSLDEFESGCAPYREWFRLDHPDFPFMQVRNVSAKDPTPMDKLLAG
CCHHHHHHHHHCCCCCHHHHHCCCHHHHHHHCCCCCCCCHHHCCCCCCCCCCCHHHHHHH
LTGATNSCFVNEPGLGACLCGGCAAIALFNQSSNAPSFGGGFKGSLRGGAPVTTLVQGEH
HCCCCCCEEECCCCCCHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCHH
LRQTVWLNVLSEERLTQIIPWHHATRSQQPTWVAPIKAGETIPSQAIGVLRGLFWQPGHL
HHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCE
ELMPPQGEQACICCGFVEKQVYAGFNKAKFNYTIDGLWPHPHGPRISSVKKGEREEKFVS
EEECCCCCCEEEEEHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCHHHCCCCHHHEEE
FTTAAPAWTHLSRFVVQRQTTNSKEEGQEPAAVVRQAQGLLNKLRLAVGGYRNNQASILE
EECCCCHHHHHHHHHHHHHCCCCHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
RRHELIFLNDGWSGHTEVVHALVGQAVGYRDALNKALFVFSTGFKEIKGAGVKVHELAKE
CCCCEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHEEEEEECCHHHHCCCCCHHHHHHHH
QFYRRSEDTVLDTLARIDFEQAALALLAMGDGLHGIVVGLFNESVAPYRNDPELIRTTAV
HHHHCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHH
ARKTLYKHLNALKPQRDGRRDDGTNA
HHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]