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The map label for this gene is ymdB [H]

Identifier: 39996240

GI number: 39996240

Start: 1221808

End: 1222596

Strand: Direct

Name: ymdB [H]

Synonym: GSU1138

Alternate gene names: 39996240

Gene position: 1221808-1222596 (Clockwise)

Preceding gene: 39996239

Following gene: 39996241

Centisome position: 32.03

GC content: 55.64

Gene sequence:

>789_bases
ATGCCCGTTAATATCCTCTTTATTGGCGATATTGTCGGGAGCCCGGGGCGACAGGCGCTTGTCCGTGAACTTCACCGGCT
CGTGGATCATCACCGGGTGGATCTTGTTGTAGCCAATGGCGAAAATTCGGCCGGTGGCTTCGGGATCACCGAGGAGACGG
CAAAGGAGCTCTTCTCGCTCGGGATCGATGTCCTGACCAGTGGCAACCACATTTGGGACAAGCGAGAATCCTTTTCCTTC
ATCGGTCGGGAAGAGCGGCTGGTGCGTCCGGCAAACTACCCTCCCGGCACCGTGGGGCGCGGATCAACTGTGGTTCGCAC
AGCCGGAGGAGTGCCGGTTGGCATTCTGAATCTTGAGGGGCGGGTATTCATGAACAACCTGGATTGCCCGTTTCGTGCCG
CCGATCAGGAAATCGAGAGACTGAGGGAGTCGACACCGCTTATTTTTGTCGACTTCCATGCGGAAGCCACATCGGAAAAA
ATTGCTCTTGGCTGGTATCTTGACGGCAAGGCCAGTGCAGTCGTCGGAACGCATACCCATGTTCAAACTGCAGATGAACG
TATCTTGCCCGGCGGCACAGCGTATATTACCGATGCGGGCATGACGGGAAGTTTTGATTCAGTTATCGGGGTTCGCAAAG
AGCTGGCGGTGGAACGGTTTGTCACGCAAATGCCGGTCAGGTTCGAGGTTGCAAAGAAGGATGTGCGACTTAACGGAGTT
GTCATTGGTGTCGATCCGGCCAGTGGCCGGGCACTCTCCATTGAGCGCATTTCACTAATCTGTTCGTGA

Upstream 100 bases:

>100_bases
GTTCTGCTGGCCAAGGACATCGCCAAGAAGATCGAGGCCGAGATGACCTATCCCGGTCAGATCAAGGTGAATGTTATCCG
GGAAACCCGCGCCATAGAGT

Downstream 100 bases:

>100_bases
GGAGGATTGCCCAGGCCATGTCCGTTGCCGATCAAATGGCGCTCATCAAGCGGGGCGCGGTAGAGATACTGGTAGAAAAG
GAACTAGAGGAAAAACTCGA

Product: Ser/Thr protein phosphatase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 261

Protein sequence:

>262_residues
MPVNILFIGDIVGSPGRQALVRELHRLVDHHRVDLVVANGENSAGGFGITEETAKELFSLGIDVLTSGNHIWDKRESFSF
IGREERLVRPANYPPGTVGRGSTVVRTAGGVPVGILNLEGRVFMNNLDCPFRAADQEIERLRESTPLIFVDFHAEATSEK
IALGWYLDGKASAVVGTHTHVQTADERILPGGTAYITDAGMTGSFDSVIGVRKELAVERFVTQMPVRFEVAKKDVRLNGV
VIGVDPASGRALSIERISLICS

Sequences:

>Translated_262_residues
MPVNILFIGDIVGSPGRQALVRELHRLVDHHRVDLVVANGENSAGGFGITEETAKELFSLGIDVLTSGNHIWDKRESFSF
IGREERLVRPANYPPGTVGRGSTVVRTAGGVPVGILNLEGRVFMNNLDCPFRAADQEIERLRESTPLIFVDFHAEATSEK
IALGWYLDGKASAVVGTHTHVQTADERILPGGTAYITDAGMTGSFDSVIGVRKELAVERFVTQMPVRFEVAKKDVRLNGV
VIGVDPASGRALSIERISLICS
>Mature_261_residues
PVNILFIGDIVGSPGRQALVRELHRLVDHHRVDLVVANGENSAGGFGITEETAKELFSLGIDVLTSGNHIWDKRESFSFI
GREERLVRPANYPPGTVGRGSTVVRTAGGVPVGILNLEGRVFMNNLDCPFRAADQEIERLRESTPLIFVDFHAEATSEKI
ALGWYLDGKASAVVGTHTHVQTADERILPGGTAYITDAGMTGSFDSVIGVRKELAVERFVTQMPVRFEVAKKDVRLNGVV
IGVDPASGRALSIERISLICS

Specific function: Unknown

COG id: COG1692

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005235 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28404; Mature: 28273

Theoretical pI: Translated: 6.17; Mature: 6.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVNILFIGDIVGSPGRQALVRELHRLVDHHRVDLVVANGENSAGGFGITEETAKELFSL
CCEEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHC
GIDVLTSGNHIWDKRESFSFIGREERLVRPANYPPGTVGRGSTVVRTAGGVPVGILNLEG
CHHEEECCCCCCCCCHHHHHCCCCHHEECCCCCCCCCCCCCCEEEEECCCCEEEEEECCC
RVFMNNLDCPFRAADQEIERLRESTPLIFVDFHAEATSEKIALGWYLDGKASAVVGTHTH
EEEEECCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEEEEECCCCEEEEECCCE
VQTADERILPGGTAYITDAGMTGSFDSVIGVRKELAVERFVTQMPVRFEVAKKDVRLNGV
EECCCCEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEEE
VIGVDPASGRALSIERISLICS
EEEECCCCCCEEEEEEEEEEEC
>Mature Secondary Structure 
PVNILFIGDIVGSPGRQALVRELHRLVDHHRVDLVVANGENSAGGFGITEETAKELFSL
CEEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHC
GIDVLTSGNHIWDKRESFSFIGREERLVRPANYPPGTVGRGSTVVRTAGGVPVGILNLEG
CHHEEECCCCCCCCCHHHHHCCCCHHEECCCCCCCCCCCCCCEEEEECCCCEEEEEECCC
RVFMNNLDCPFRAADQEIERLRESTPLIFVDFHAEATSEKIALGWYLDGKASAVVGTHTH
EEEEECCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEEEEECCCCEEEEECCCE
VQTADERILPGGTAYITDAGMTGSFDSVIGVRKELAVERFVTQMPVRFEVAKKDVRLNGV
EECCCCEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEEE
VIGVDPASGRALSIERISLICS
EEEECCCCCCEEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]