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The map label for this gene is cspLA [H]

Identifier: 39995688

GI number: 39995688

Start: 613202

End: 613402

Strand: Direct

Name: cspLA [H]

Synonym: GSU0581

Alternate gene names: 39995688

Gene position: 613202-613402 (Clockwise)

Preceding gene: 39995687

Following gene: 39995689

Centisome position: 16.08

GC content: 53.73

Gene sequence:

>201_bases
ATGGCTAAAGGTGTGGTGAAATGGTTCAATGACAGCAAGGGGTATGGCTTTATCGAGCAGGAAAACGGCGAGGATGTGTT
TGTTCATTTTTCCTCGATCCAGGGCGACGGGTTCAAGACCTTGGTCGAAGGACAGGCGGTGACCTTTGATGTGGTTCAGG
GGGCCAAGGGCCTCCAGGCGGCCAATGTCATGAAGGCGTAG

Upstream 100 bases:

>100_bases
GCTTGACAGGCCGTGTGTATTGGTGCTAGAAAGCGAAAAATTCGTCCGGGCTCACCCAAAGCCCCATTATGCCGCTGGCA
GTAACAGGAGGAGAGGAGTA

Downstream 100 bases:

>100_bases
GCAGCACATCCGCACACGGTTGCGCATTGCGAAGCCCCGGGGGAACCCGGGGCTTTTTGCGTGTTCAGAGTGCGGGAATG
AACGGATGATCGTCGCAGTG

Product: cold-shock domain-contain protein

Products: NA

Alternate protein names: CspL [H]

Number of amino acids: Translated: 66; Mature: 65

Protein sequence:

>66_residues
MAKGVVKWFNDSKGYGFIEQENGEDVFVHFSSIQGDGFKTLVEGQAVTFDVVQGAKGLQAANVMKA

Sequences:

>Translated_66_residues
MAKGVVKWFNDSKGYGFIEQENGEDVFVHFSSIQGDGFKTLVEGQAVTFDVVQGAKGLQAANVMKA
>Mature_65_residues
AKGVVKWFNDSKGYGFIEQENGEDVFVHFSSIQGDGFKTLVEGQAVTFDVVQGAKGLQAANVMKA

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=63, Percent_Identity=66.6666666666667, Blast_Score=86, Evalue=5e-19,
Organism=Escherichia coli, GI1788126, Length=62, Percent_Identity=64.5161290322581, Blast_Score=79, Evalue=7e-17,
Organism=Escherichia coli, GI1787839, Length=62, Percent_Identity=61.2903225806452, Blast_Score=78, Evalue=1e-16,
Organism=Escherichia coli, GI1787107, Length=66, Percent_Identity=56.0606060606061, Blast_Score=78, Evalue=1e-16,
Organism=Escherichia coli, GI1789979, Length=61, Percent_Identity=60.655737704918, Blast_Score=76, Evalue=4e-16,
Organism=Escherichia coli, GI2367114, Length=62, Percent_Identity=54.8387096774194, Blast_Score=70, Evalue=2e-14,
Organism=Escherichia coli, GI1787834, Length=62, Percent_Identity=54.8387096774194, Blast_Score=69, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7127; Mature: 6996

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKGVVKWFNDSKGYGFIEQENGEDVFVHFSSIQGDGFKTLVEGQAVTFDVVQGAKGLQA
CCCCCEEECCCCCCCCEEECCCCCEEEEEEECCCCCCCEEEECCCEEEEEECCCCCCCCC
ANVMKA
CCCCCC
>Mature Secondary Structure 
AKGVVKWFNDSKGYGFIEQENGEDVFVHFSSIQGDGFKTLVEGQAVTFDVVQGAKGLQA
CCCCEEECCCCCCCCEEECCCCCEEEEEEECCCCCCCEEEECCCEEEEEECCCCCCCCC
ANVMKA
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11679669; 9439003 [H]