Click here to switch to the map view.

The map label for this gene is ydcN [C]

Identifier: 39995190

GI number: 39995190

Start: 91135

End: 91725

Strand: Reverse

Name: ydcN [C]

Synonym: GSU0079

Alternate gene names: 39995190

Gene position: 91725-91135 (Counterclockwise)

Preceding gene: 39995196

Following gene: 39995186

Centisome position: 2.4

GC content: 58.54

Gene sequence:

>591_bases
GTGGACGATATCAAATCCCAGATCAAGGAATTGCGGCTCGGCGCCAAGATCAGAAAACTCCGTCAGGATCGGCGGCTCAC
CCTCCAGGAACTGTCTGAGCTCTCGGGACTCTCGAAACCCCTTCTTTCCCAGATCGAAAACGATCAGGTCACCCCTCCGA
TTGCCACGTTGCTCAAGATATCCAAAGGACTGAAGGTGGGCATCCACTACTTTTTCGAAGAGGAAGAAGACCAGCAGAAA
GTGGTGCTGACCCGGGCAGCACAGCAGCAGCCGACCCGGCGGCGCTCAGGCAATGATGCGCCCCATGGCTACATCTACCG
GTCCCTGGCCCCAGGCATCAGGCACAAGCCCATGGAACCCTTCCTGGTGGAGTTCGAGTTGACCGACTGGAGCGACAGCT
TCTTCTACCGGCACGATGGCTTCGAGTTCATCTATCTGCTCGACGGAGAGCTGGAATTCCACTACGGTAGCGATGTCATG
CGGCTCCTGCCGGGCGACAGCATCTACTACGATTCCTCGGAGCCCCACGGCTACGTGTCGGTGGGAGAAGAACGGGCCCG
GGCAGTGGCGGTTCTCTATACCCGGGACTGA

Upstream 100 bases:

>100_bases
CAACGCCCTTTCGGCGCCGAGCCGCGCCCCGCGGCCATTCGGATTAGCACTTGACGCTCCCGCGGGAGTTGACCTATAAC
GGGCAGGAGAGGAGTTCATC

Downstream 100 bases:

>100_bases
GCCGGTCCGGCCGAAAGGTTAACGAACGGGCCGTTCCCGCTGCCGCTGCTCCAACAGCAGTCGCATGAACTCACGCAACG
TCTCCCGGCCCCGGACATCC

Product: Cro/CI family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator XRE Family; XRE Family Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Cro/CI Family Transcriptional Regulator; HTH-Type Transcriptional Regulator; MerR Family Transcriptional Regulator; Cupin 2 Domain-Containing Protein; Transcriptional Regulator Protein; Transcriptional Regulator MerR Family; Transcriptional Regulator HTH_3 Family; Cupin 2 Conserved Barrel Domain Protein; Transcriptional Regulator XRE Family With Cupin Sensor; Transcriptional Regulator Merr Family; Helix-Turn-Helix Domain Protein; Transcription Regulator; XRE Family-Like Protein; Epoxidase; Helix-Turn-Helix Transcriptional Regulator PuuR; Helix-Turn-Helix/Cupin Domain Protein; Cupin 2 Barrel Domain-Containing Protein; Transcriptional Regulator-Like Protein; Cupin 2 Conserved Barrel Domain-Containing Protein; Transcriptional Regulator Protein LacI Family; Cupin Domain Protein; HTH_3family Transcriptional Regulator; Transcriptional Regulator Xre Family; Transcriptional Regulator XRE Family Protein; Helix-Turn-Helix Transcriptional Regulator; Phosphotransbutyrylase; Helix-Turn-Helix Family Protein; Xre Family xin-Antitoxin System Antitoxin Component

Number of amino acids: Translated: 196; Mature: 196

Protein sequence:

>196_residues
MDDIKSQIKELRLGAKIRKLRQDRRLTLQELSELSGLSKPLLSQIENDQVTPPIATLLKISKGLKVGIHYFFEEEEDQQK
VVLTRAAQQQPTRRRSGNDAPHGYIYRSLAPGIRHKPMEPFLVEFELTDWSDSFFYRHDGFEFIYLLDGELEFHYGSDVM
RLLPGDSIYYDSSEPHGYVSVGEERARAVAVLYTRD

Sequences:

>Translated_196_residues
MDDIKSQIKELRLGAKIRKLRQDRRLTLQELSELSGLSKPLLSQIENDQVTPPIATLLKISKGLKVGIHYFFEEEEDQQK
VVLTRAAQQQPTRRRSGNDAPHGYIYRSLAPGIRHKPMEPFLVEFELTDWSDSFFYRHDGFEFIYLLDGELEFHYGSDVM
RLLPGDSIYYDSSEPHGYVSVGEERARAVAVLYTRD
>Mature_196_residues
MDDIKSQIKELRLGAKIRKLRQDRRLTLQELSELSGLSKPLLSQIENDQVTPPIATLLKISKGLKVGIHYFFEEEEDQQK
VVLTRAAQQQPTRRRSGNDAPHGYIYRSLAPGIRHKPMEPFLVEFELTDWSDSFFYRHDGFEFIYLLDGELEFHYGSDVM
RLLPGDSIYYDSSEPHGYVSVGEERARAVAVLYTRD

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787704, Length=172, Percent_Identity=26.7441860465116, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22679; Mature: 22679

Theoretical pI: Translated: 5.96; Mature: 5.96

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDIKSQIKELRLGAKIRKLRQDRRLTLQELSELSGLSKPLLSQIENDQVTPPIATLLKI
CCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHH
SKGLKVGIHYFFEEEEDQQKVVLTRAAQQQPTRRRSGNDAPHGYIYRSLAPGIRHKPMEP
HCCCEEEEEEEECCCCCHHHHHHHHHHHCCCHHHCCCCCCCCCEEEHHHCCCCCCCCCCC
FLVEFELTDWSDSFFYRHDGFEFIYLLDGELEFHYGSDVMRLLPGDSIYYDSSEPHGYVS
EEEEEEECCCCCCEEEEECCEEEEEEECCEEEEEECCCHHHHCCCCEEEECCCCCCCEEE
VGEERARAVAVLYTRD
ECCCCCEEEEEEEECC
>Mature Secondary Structure
MDDIKSQIKELRLGAKIRKLRQDRRLTLQELSELSGLSKPLLSQIENDQVTPPIATLLKI
CCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHH
SKGLKVGIHYFFEEEEDQQKVVLTRAAQQQPTRRRSGNDAPHGYIYRSLAPGIRHKPMEP
HCCCEEEEEEEECCCCCHHHHHHHHHHHCCCHHHCCCCCCCCCEEEHHHCCCCCCCCCCC
FLVEFELTDWSDSFFYRHDGFEFIYLLDGELEFHYGSDVMRLLPGDSIYYDSSEPHGYVS
EEEEEEECCCCCCEEEEECCEEEEEEECCEEEEEECCCHHHHCCCCEEEECCCCCCCEEE
VGEERARAVAVLYTRD
ECCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA