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The map label for this gene is ybaB [C]

Identifier: 38232883

GI number: 38232883

Start: 223595

End: 223915

Strand: Direct

Name: ybaB [C]

Synonym: DIP0260

Alternate gene names: 38232883

Gene position: 223595-223915 (Clockwise)

Preceding gene: 38232882

Following gene: 38232884

Centisome position: 8.98

GC content: 56.07

Gene sequence:

>321_bases
ATGACTCAGCCGGATATGTCCCAGATCCTTGCACAGGCACAGCAGATGCAGGCTAAGCTGCAGGAAGCTCAGCGTGAGAT
CCTTGCTACCACCGTCACCGGTACCGCTGGCAATGGTCTTGTGAGCATTGACATGCAGGGCAACGGCATGGTTTCTTCCG
TCACCATCGACCCTAAGGTTGTTGACGCTGACGATGTAGAAACCCTCCAGGACCTGCTTGTTGGTGCATTCGCAGAGGCT
CATGAAAAGCTCGGCACCCTTGCAGAGCAGAAGATGGGCCCGCTGTCTCAGGGCTTCGACGGCCTTGGTGGGATGTTCTA
A

Upstream 100 bases:

>100_bases
CGAAGAGCTAGGTGCTCGACAGCTTTAGGTACACTATTCGAATGACCGCCGTCGCACAGCAGGTGTGGCGGATACTAAAA
ACAATGCGAAAGGCAGTTGA

Downstream 100 bases:

>100_bases
GAGTTGTTCGAAGGACCTCTCCAAGACCTGATCGACGAGTTTTCTCGGCTCCCTGGTGTGGGGCCGAAGTCGGCTCAGCG
CATTGCTTTCCACCTGCTCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 106; Mature: 105

Protein sequence:

>106_residues
MTQPDMSQILAQAQQMQAKLQEAQREILATTVTGTAGNGLVSIDMQGNGMVSSVTIDPKVVDADDVETLQDLLVGAFAEA
HEKLGTLAEQKMGPLSQGFDGLGGMF

Sequences:

>Translated_106_residues
MTQPDMSQILAQAQQMQAKLQEAQREILATTVTGTAGNGLVSIDMQGNGMVSSVTIDPKVVDADDVETLQDLLVGAFAEA
HEKLGTLAEQKMGPLSQGFDGLGGMF
>Mature_105_residues
TQPDMSQILAQAQQMQAKLQEAQREILATTVTGTAGNGLVSIDMQGNGMVSSVTIDPKVVDADDVETLQDLLVGAFAEAH
EKLGTLAEQKMGPLSQGFDGLGGMF

Specific function: Unknown

COG id: COG0718

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0133 family

Homologues:

Organism=Escherichia coli, GI1786677, Length=93, Percent_Identity=38.7096774193548, Blast_Score=67, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y260_CORDI (Q6NJY1)

Other databases:

- EMBL:   BX248354
- RefSeq:   NP_938650.1
- ProteinModelPortal:   Q6NJY1
- SMR:   Q6NJY1
- GeneID:   2650435
- GenomeReviews:   BX248353_GR
- KEGG:   cdi:DIP0260
- NMPDR:   fig|257309.1.peg.241
- HOGENOM:   HBG734215
- OMA:   QVNDATQ
- ProtClustDB:   PRK00153
- BioCyc:   CDIP257309:DIP0260-MONOMER
- HAMAP:   MF_00274
- InterPro:   IPR004401
- Gene3D:   G3DSA:3.30.1310.10
- PIRSF:   PIRSF004555
- TIGRFAMs:   TIGR00103

Pfam domain/function: PF02575 DUF149; SSF82607 CHP00103

EC number: NA

Molecular weight: Translated: 11138; Mature: 11007

Theoretical pI: Translated: 3.90; Mature: 3.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.6 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.7 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQPDMSQILAQAQQMQAKLQEAQREILATTVTGTAGNGLVSIDMQGNGMVSSVTIDPKV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEEECCCE
VDADDVETLQDLLVGAFAEAHEKLGTLAEQKMGPLSQGFDGLGGMF
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCC
>Mature Secondary Structure 
TQPDMSQILAQAQQMQAKLQEAQREILATTVTGTAGNGLVSIDMQGNGMVSSVTIDPKV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEEECCCE
VDADDVETLQDLLVGAFAEAHEKLGTLAEQKMGPLSQGFDGLGGMF
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14602910