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The map label for this gene is hydD [H]

Identifier: 21674705

GI number: 21674705

Start: 1792460

End: 1793227

Strand: Direct

Name: hydD [H]

Synonym: CT1893

Alternate gene names: 21674705

Gene position: 1792460-1793227 (Clockwise)

Preceding gene: 21674704

Following gene: 21674706

Centisome position: 83.18

GC content: 59.64

Gene sequence:

>768_bases
ATGAACCACCTCGGATTCGATAGAGAGAAAATCAGGATCGGCTCCTTCGACTTCACCTGCTGCGAAGGGTGCCAGCTCCA
GCTCGCCAACAAGGAATCGACCCTGCCGGAGTTCCTCGCCCTGCTCGACATCAGGAACTTCCGCGAAATCTCCTCGGAGC
GGCTGGACGATTACGACATCGCGCTGGTCGAAGGAAGCATCACGCGCCAGGATGAGGTCGAGCGACTGAAGGCGATCCGC
GCCCAGGCCAAGACGCTCGTCGCCTACGGAACCTGCGCCTGCTTCGGCGGCATGAACGCGCAGAAAAACAAGTTCGACAA
GGAGGAGTGCATCCGCACGGTCTATGGCGATAAAGAGATCGACACCATGCAAGAGTCGCACAAGATCAGCGACTTCGTGC
AGGTCGATTACTCGATTCCCGGCTGCCCGGTGAACAAGGAGGAGGTCGAGCGCATCGTGGTGAGCATCGCCACCCGCTCG
CCCATCTCGCTGCCGAAGTACCCGGTATGCGTCGAGTGCAAGCAGCGGCTCAACACCTGCCTGTTCGACCTCGGCGAGGT
GTGCCTCGGCCCGATTTCACGCGCCGGATGCAACGCGGTCTGCCCAACCGGCAAGACAGTCTGCCTCGGCTGCCGAGGCC
CGGCGGACGGCATCAACTACGACTCGTTCGTGCAGCTCGTTAAAGAGCACGGACTGAGCGAGAACGAAATGAACGAAAAG
CTCGCATTTTACAACGGTTTCGCAGAGTATCTGAGCCATGAAGGTTGA

Upstream 100 bases:

>100_bases
CCGCTGCATGGTCGGCTCGACCTTCACCTGCCTCGACGGCCCGGTATTCGACTACTGGAGCGTCATGAATCTCAAGGAAG
CGATTTAAGGATTGACCACC

Downstream 100 bases:

>100_bases
CTTCAACATAGACATCCACCACCTGCCGAGGGTCGAAGGCCACGGCGATATTCGCATTTCAGTCAGGGACGGCAAGCTCG
TTGACGCCAAATGGGCGGTG

Product: hydrogenase/sulfur reductase, delta subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MNHLGFDREKIRIGSFDFTCCEGCQLQLANKESTLPEFLALLDIRNFREISSERLDDYDIALVEGSITRQDEVERLKAIR
AQAKTLVAYGTCACFGGMNAQKNKFDKEECIRTVYGDKEIDTMQESHKISDFVQVDYSIPGCPVNKEEVERIVVSIATRS
PISLPKYPVCVECKQRLNTCLFDLGEVCLGPISRAGCNAVCPTGKTVCLGCRGPADGINYDSFVQLVKEHGLSENEMNEK
LAFYNGFAEYLSHEG

Sequences:

>Translated_255_residues
MNHLGFDREKIRIGSFDFTCCEGCQLQLANKESTLPEFLALLDIRNFREISSERLDDYDIALVEGSITRQDEVERLKAIR
AQAKTLVAYGTCACFGGMNAQKNKFDKEECIRTVYGDKEIDTMQESHKISDFVQVDYSIPGCPVNKEEVERIVVSIATRS
PISLPKYPVCVECKQRLNTCLFDLGEVCLGPISRAGCNAVCPTGKTVCLGCRGPADGINYDSFVQLVKEHGLSENEMNEK
LAFYNGFAEYLSHEG
>Mature_255_residues
MNHLGFDREKIRIGSFDFTCCEGCQLQLANKESTLPEFLALLDIRNFREISSERLDDYDIALVEGSITRQDEVERLKAIR
AQAKTLVAYGTCACFGGMNAQKNKFDKEECIRTVYGDKEIDTMQESHKISDFVQVDYSIPGCPVNKEEVERIVVSIATRS
PISLPKYPVCVECKQRLNTCLFDLGEVCLGPISRAGCNAVCPTGKTVCLGCRGPADGINYDSFVQLVKEHGLSENEMNEK
LAFYNGFAEYLSHEG

Specific function: Unknown

COG id: COG1941

COG function: function code C; Coenzyme F420-reducing hydrogenase, gamma subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the [NiFe]/[NiFeSe] hydrogenase small subunit family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006137 [H]

Pfam domain/function: PF01058 Oxidored_q6 [H]

EC number: NA

Molecular weight: Translated: 28482; Mature: 28482

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.9 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
7.5 %Cys+Met (Translated Protein)
5.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
7.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNHLGFDREKIRIGSFDFTCCEGCQLQLANKESTLPEFLALLDIRNFREISSERLDDYDI
CCCCCCCCCCEEECCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEE
ALVEGSITRQDEVERLKAIRAQAKTLVAYGTCACFGGMNAQKNKFDKEECIRTVYGDKEI
EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCHH
DTMQESHKISDFVQVDYSIPGCPVNKEEVERIVVSIATRSPISLPKYPVCVECKQRLNTC
HHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
LFDLGEVCLGPISRAGCNAVCPTGKTVCLGCRGPADGINYDSFVQLVKEHGLSENEMNEK
HHHHHHHHHCCHHHCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCHHHHHHH
LAFYNGFAEYLSHEG
HHHHHHHHHHHCCCC
>Mature Secondary Structure
MNHLGFDREKIRIGSFDFTCCEGCQLQLANKESTLPEFLALLDIRNFREISSERLDDYDI
CCCCCCCCCCEEECCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEE
ALVEGSITRQDEVERLKAIRAQAKTLVAYGTCACFGGMNAQKNKFDKEECIRTVYGDKEI
EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCHH
DTMQESHKISDFVQVDYSIPGCPVNKEEVERIVVSIATRSPISLPKYPVCVECKQRLNTC
HHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
LFDLGEVCLGPISRAGCNAVCPTGKTVCLGCRGPADGINYDSFVQLVKEHGLSENEMNEK
HHHHHHHHHCCHHHCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCHHHHHHH
LAFYNGFAEYLSHEG
HHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]