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The map label for this gene is hydB-1 [H]

Identifier: 21674703

GI number: 21674703

Start: 1790490

End: 1791569

Strand: Direct

Name: hydB-1 [H]

Synonym: CT1891

Alternate gene names: 21674703

Gene position: 1790490-1791569 (Clockwise)

Preceding gene: 21674702

Following gene: 21674704

Centisome position: 83.09

GC content: 58.61

Gene sequence:

>1080_bases
ATGATCTACAAAGTCATCTCCAAAGACGAGTTCCGCAATTTCGTCGATGCCCTCGTCAGGGCGAACACCTCTTATGGGCC
GCGCCAGGTTGATACCGACCGCAACGGCGAGCCGATCTACCAGTTCATGCCGGTCTCGTCGGCAAGCGAGATCGCCTTCG
ACTACACCGTCACCACCTCCTCGGCCAAACATTTCCTGATGCCCTTTCGCGAAGAGCTGTCGAAGTTCAGCTTCCGCGAT
GGCGACTGGGATCAGGAGGTGAAGTACGACGCGCCGCCCATCGTGCTCGTCGGCCTGCGTCCGTGCGACATCAACGCCAT
CAACATCCTCGACGAGGTGATGCTGAAAGGGCCGTATCCGTCGCCCTACTACCTGGCGCGGCGCAAGAATACCTTCATCA
TCGGCATGGATCACCTGCCGCTGCCGGACTGCTTCTGCCGCTCGATGAACCGGCACACGACCGACCACGGCTTCAACCTC
TTCGCCTCGGACATCGGCGAGAGCTACTTCCTGTCGATCAACTCCTCGAAAGCCTTCAACTTCCTCAAGGAGTTCGAGAC
CACCGAGCCGACCGAAGAGGACGACTGCAAGCTCATCGAACGGCGCAAGCTGATCAAGCAGAGCTTCAAGACCAACGTCG
AGGTGACCGGCCTGCCGGTGTTCCTCGACTTGGAGTTCGACTCGCCGATCTGGAAAAAGTGGGGAGACAAGTGCCTGAAC
TGCGGCTCCTGCGCGATGGTCTGCCCGACCTGCTACTGCTACAACGTCGAGGAACACTTCGAAACGAATCTCGAAAGCTC
CAGCCGACAGAGGCGGCTCTATTCGTGCAACCTGATCGATTTCGCCGAAGTAACCGGCGGGCACAACTTCCGCCCGAAAA
ATGGCGACCGGCTCAAGTACCGTTACTACCACCACTACCGGGGGTTTGCGGTCAACGACAACCAGCAGATTTGCGTTGGC
TGCAACCGCTGCGGACGCGCCTGCCTGGCCGGCATCAATCCGAAGGACGTCATCAACGACCTCAGACTGGAAAAAGAATC
ATGCGTGACCTGCGTTTCACCATCACCGGCGAAGACCTGA

Upstream 100 bases:

>100_bases
TCTGTTTCCGGTCTCCCCCTTTTGTGTACTTTTACAGAAACGGCCCCAGCTTCACCGCAGATGCGTCGATAGCGGGCCAC
GCCAAAACGGGAGACAGCGA

Downstream 100 bases:

>100_bases
ACCGCGAGCCGTTCGCCCGCACGAGCCCCGATTTCGGCAAGAAGTCGGAGGTAATGGTGACCGACCACGGCTACAAGTGC
CGCATCACCAACATCGTGCC

Product: hydrogenase/sulfur reductase, beta subunit

Products: NA

Alternate protein names: Anaerobic sulfite reductase iron-sulfur subunit [H]

Number of amino acids: Translated: 359; Mature: 359

Protein sequence:

>359_residues
MIYKVISKDEFRNFVDALVRANTSYGPRQVDTDRNGEPIYQFMPVSSASEIAFDYTVTTSSAKHFLMPFREELSKFSFRD
GDWDQEVKYDAPPIVLVGLRPCDINAINILDEVMLKGPYPSPYYLARRKNTFIIGMDHLPLPDCFCRSMNRHTTDHGFNL
FASDIGESYFLSINSSKAFNFLKEFETTEPTEEDDCKLIERRKLIKQSFKTNVEVTGLPVFLDLEFDSPIWKKWGDKCLN
CGSCAMVCPTCYCYNVEEHFETNLESSSRQRRLYSCNLIDFAEVTGGHNFRPKNGDRLKYRYYHHYRGFAVNDNQQICVG
CNRCGRACLAGINPKDVINDLRLEKESCVTCVSPSPAKT

Sequences:

>Translated_359_residues
MIYKVISKDEFRNFVDALVRANTSYGPRQVDTDRNGEPIYQFMPVSSASEIAFDYTVTTSSAKHFLMPFREELSKFSFRD
GDWDQEVKYDAPPIVLVGLRPCDINAINILDEVMLKGPYPSPYYLARRKNTFIIGMDHLPLPDCFCRSMNRHTTDHGFNL
FASDIGESYFLSINSSKAFNFLKEFETTEPTEEDDCKLIERRKLIKQSFKTNVEVTGLPVFLDLEFDSPIWKKWGDKCLN
CGSCAMVCPTCYCYNVEEHFETNLESSSRQRRLYSCNLIDFAEVTGGHNFRPKNGDRLKYRYYHHYRGFAVNDNQQICVG
CNRCGRACLAGINPKDVINDLRLEKESCVTCVSPSPAKT
>Mature_359_residues
MIYKVISKDEFRNFVDALVRANTSYGPRQVDTDRNGEPIYQFMPVSSASEIAFDYTVTTSSAKHFLMPFREELSKFSFRD
GDWDQEVKYDAPPIVLVGLRPCDINAINILDEVMLKGPYPSPYYLARRKNTFIIGMDHLPLPDCFCRSMNRHTTDHGFNL
FASDIGESYFLSINSSKAFNFLKEFETTEPTEEDDCKLIERRKLIKQSFKTNVEVTGLPVFLDLEFDSPIWKKWGDKCLN
CGSCAMVCPTCYCYNVEEHFETNLESSSRQRRLYSCNLIDFAEVTGGHNFRPKNGDRLKYRYYHHYRGFAVNDNQQICVG
CNRCGRACLAGINPKDVINDLRLEKESCVTCVSPSPAKT

Specific function: Electron transfer protein for anaerobic sulfite reductase subunit A [H]

COG id: COG1145

COG function: function code C; Ferredoxin

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR014259 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 41244; Mature: 41244

Theoretical pI: Translated: 6.49; Mature: 6.49

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
4.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIYKVISKDEFRNFVDALVRANTSYGPRQVDTDRNGEPIYQFMPVSSASEIAFDYTVTTS
CEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEECC
SAKHFLMPFREELSKFSFRDGDWDQEVKYDAPPIVLVGLRPCDINAINILDEVMLKGPYP
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCC
SPYYLARRKNTFIIGMDHLPLPDCFCRSMNRHTTDHGFNLFASDIGESYFLSINSSKAFN
CCEEEEECCCEEEEEECCCCCCHHHHHHHCCCCCCCCCCHHHHHCCCEEEEEECCHHHHH
FLKEFETTEPTEEDDCKLIERRKLIKQSFKTNVEVTGLPVFLDLEFDSPIWKKWGDKCLN
HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECEEEEEEEECCCHHHHHHHHHHCC
CGSCAMVCPTCYCYNVEEHFETNLESSSRQRRLYSCNLIDFAEVTGGHNFRPKNGDRLKY
CCCHHHHCCEEEEECCHHHHHCCCCHHHHHCEEEECCCEEHHHHCCCCCCCCCCCCEEEE
RYYHHYRGFAVNDNQQICVGCNRCGRACLAGINPKDVINDLRLEKESCVTCVSPSPAKT
EEEEEECCEEECCCCEEEEECCHHHHHHCCCCCHHHHHHHHHCCHHHCEEECCCCCCCC
>Mature Secondary Structure
MIYKVISKDEFRNFVDALVRANTSYGPRQVDTDRNGEPIYQFMPVSSASEIAFDYTVTTS
CEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEECC
SAKHFLMPFREELSKFSFRDGDWDQEVKYDAPPIVLVGLRPCDINAINILDEVMLKGPYP
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCC
SPYYLARRKNTFIIGMDHLPLPDCFCRSMNRHTTDHGFNLFASDIGESYFLSINSSKAFN
CCEEEEECCCEEEEEECCCCCCHHHHHHHCCCCCCCCCCHHHHHCCCEEEEEECCHHHHH
FLKEFETTEPTEEDDCKLIERRKLIKQSFKTNVEVTGLPVFLDLEFDSPIWKKWGDKCLN
HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECEEEEEEEECCCHHHHHHHHHHCC
CGSCAMVCPTCYCYNVEEHFETNLESSSRQRRLYSCNLIDFAEVTGGHNFRPKNGDRLKY
CCCHHHHCCEEEEECCHHHHHCCCCHHHHHCEEEECCCEEHHHHCCCCCCCCCCCCEEEE
RYYHHYRGFAVNDNQQICVGCNRCGRACLAGINPKDVINDLRLEKESCVTCVSPSPAKT
EEEEEECCEEECCCCEEEEECCHHHHHHCCCCCHHHHHHHHHCCHHHCEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1704886; 11677609 [H]