| Definition | Chlorobium tepidum TLS, complete genome. |
|---|---|
| Accession | NC_002932 |
| Length | 2,154,946 |
Click here to switch to the map view.
The map label for this gene is 21674015
Identifier: 21674015
GI number: 21674015
Start: 1118285
End: 1119133
Strand: Direct
Name: 21674015
Synonym: CT1189
Alternate gene names: NA
Gene position: 1118285-1119133 (Clockwise)
Preceding gene: 21674014
Following gene: 21674021
Centisome position: 51.89
GC content: 53.95
Gene sequence:
>849_bases ATGGTTCAGATAGCAGGCACACCGGTTCCATTATCGGCAAAAAGCCGCGGACCAAACGCTTTGAGTTCGCTTCTGGCGGC GCTGTTTCTCCTGCTGTCGCAACCGGCCAGCGGCGCGGAAGCAAAGCAGTGCATTGACAATGCCGAACTCGATGCCGCCG ACAAGGCATTCAATTCGCTGCACTACGCAAAAGCGGACTCGCTCTACCAATCGATGCTCCAGACAGGCGATCAATCCTCG ACGCTCTACTGGAAGCTCGCCCGCCTCAACATAAGTATAGCGGAAGCGATCGACCCGAGCGAACGTAAAAAACGGATACC CTTTTACAACAAAGCGGTCGAATATGCGAGAAAATCAGTTCAGCTCGACGAAAACAACGCCAGCGCCCACACCTGGCTTG CCGCCGCTCTGGCCTTGAAAGCAGACAAAATCGGTGCAAAAGAGAAACTGAACAGAGCTGCTGAAATCAAACGTGAGCTT GACAAAGCACTCGCGCTGAACCCGAACGACGACGTCGCTTGGTCGATGCTTGGTTCGTACAACTTCGAGGCGTCGAAAAT TGGCTGGTTCAGCCGCTTCATGGGCAGCACCTTCGTCGGCAAAATGCCCAAAGGCAGCCGCGAGGAGGCGGAAAAGGATT TCAAGAAAGCGATCAGCCTGAACCCGCGAGTCATCCGGCACTACCACGAGCTGGCCCTGCTCTACCTCGAAGAGGACAGA AAACAGGAAGCCCTGAACACCTTGCGGATAGCCGAAACCAGACCGGTGCTCATGAAAAGCGACGTGAGACGACTCAAAGA GATCAAAAAGCTGATCGCCAAGCTATCGAAAGAGATTGAGGAAAAGTAA
Upstream 100 bases:
>100_bases TCCCGCCGCTGGTCGCCATTTCGATACTGCTCATCGTGCTGCCGACAGGCCACTGGCTCGGCCTCGACCGCAGCCTTAAC AGGAAATATCCGGAGTCACC
Downstream 100 bases:
>100_bases AAGACAAACTGGCGAAGGTTCAAGCAATTATCAACTCAGACAAAACTGTCTGAGCCAACCAATCAGTCATCTCCCGGCCC AGTTCAACGGTTACCCCTCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 282; Mature: 282
Protein sequence:
>282_residues MVQIAGTPVPLSAKSRGPNALSSLLAALFLLLSQPASGAEAKQCIDNAELDAADKAFNSLHYAKADSLYQSMLQTGDQSS TLYWKLARLNISIAEAIDPSERKKRIPFYNKAVEYARKSVQLDENNASAHTWLAAALALKADKIGAKEKLNRAAEIKREL DKALALNPNDDVAWSMLGSYNFEASKIGWFSRFMGSTFVGKMPKGSREEAEKDFKKAISLNPRVIRHYHELALLYLEEDR KQEALNTLRIAETRPVLMKSDVRRLKEIKKLIAKLSKEIEEK
Sequences:
>Translated_282_residues MVQIAGTPVPLSAKSRGPNALSSLLAALFLLLSQPASGAEAKQCIDNAELDAADKAFNSLHYAKADSLYQSMLQTGDQSS TLYWKLARLNISIAEAIDPSERKKRIPFYNKAVEYARKSVQLDENNASAHTWLAAALALKADKIGAKEKLNRAAEIKREL DKALALNPNDDVAWSMLGSYNFEASKIGWFSRFMGSTFVGKMPKGSREEAEKDFKKAISLNPRVIRHYHELALLYLEEDR KQEALNTLRIAETRPVLMKSDVRRLKEIKKLIAKLSKEIEEK >Mature_282_residues MVQIAGTPVPLSAKSRGPNALSSLLAALFLLLSQPASGAEAKQCIDNAELDAADKAFNSLHYAKADSLYQSMLQTGDQSS TLYWKLARLNISIAEAIDPSERKKRIPFYNKAVEYARKSVQLDENNASAHTWLAAALALKADKIGAKEKLNRAAEIKREL DKALALNPNDDVAWSMLGSYNFEASKIGWFSRFMGSTFVGKMPKGSREEAEKDFKKAISLNPRVIRHYHELALLYLEEDR KQEALNTLRIAETRPVLMKSDVRRLKEIKKLIAKLSKEIEEK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI116875831, Length=230, Percent_Identity=26.5217391304348, Blast_Score=83, Evalue=3e-16, Organism=Homo sapiens, GI283046684, Length=195, Percent_Identity=26.6666666666667, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI283046680, Length=195, Percent_Identity=26.6666666666667, Blast_Score=79, Evalue=6e-15, Organism=Homo sapiens, GI283046674, Length=195, Percent_Identity=26.6666666666667, Blast_Score=79, Evalue=6e-15, Organism=Homo sapiens, GI283046686, Length=180, Percent_Identity=26.1111111111111, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17554948, Length=264, Percent_Identity=25.3787878787879, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI17541942, Length=187, Percent_Identity=27.2727272727273, Blast_Score=86, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17531361, Length=187, Percent_Identity=26.7379679144385, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17540216, Length=187, Percent_Identity=26.2032085561497, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI193207383, Length=152, Percent_Identity=26.9736842105263, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI25146110, Length=152, Percent_Identity=26.9736842105263, Blast_Score=69, Evalue=4e-12, Organism=Caenorhabditis elegans, GI25146113, Length=152, Percent_Identity=26.9736842105263, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI25145534, Length=188, Percent_Identity=25, Blast_Score=68, Evalue=6e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31523; Mature: 31523
Theoretical pI: Translated: 9.96; Mature: 9.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVQIAGTPVPLSAKSRGPNALSSLLAALFLLLSQPASGAEAKQCIDNAELDAADKAFNSL CEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCHHHHHHHHH HYAKADSLYQSMLQTGDQSSTLYWKLARLNISIAEAIDPSERKKRIPFYNKAVEYARKSV HHHHHHHHHHHHHHCCCCCCCEEEEHHHHCCHHHHHCCCHHHHCCCCHHHHHHHHHHHHC QLDENNASAHTWLAAALALKADKIGAKEKLNRAAEIKRELDKALALNPNDDVAWSMLGSY CCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCC NFEASKIGWFSRFMGSTFVGKMPKGSREEAEKDFKKAISLNPRVIRHYHELALLYLEEDR CCCHHHHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH KQEALNTLRIAETRPVLMKSDVRRLKEIKKLIAKLSKEIEEK HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MVQIAGTPVPLSAKSRGPNALSSLLAALFLLLSQPASGAEAKQCIDNAELDAADKAFNSL CEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCHHHHHHHHH HYAKADSLYQSMLQTGDQSSTLYWKLARLNISIAEAIDPSERKKRIPFYNKAVEYARKSV HHHHHHHHHHHHHHCCCCCCCEEEEHHHHCCHHHHHCCCHHHHCCCCHHHHHHHHHHHHC QLDENNASAHTWLAAALALKADKIGAKEKLNRAAEIKRELDKALALNPNDDVAWSMLGSY CCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCC NFEASKIGWFSRFMGSTFVGKMPKGSREEAEKDFKKAISLNPRVIRHYHELALLYLEEDR CCCHHHHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH KQEALNTLRIAETRPVLMKSDVRRLKEIKKLIAKLSKEIEEK HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA