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The map label for this gene is smpB

Identifier: 21673399

GI number: 21673399

Start: 571727

End: 572200

Strand: Reverse

Name: smpB

Synonym: CT0564

Alternate gene names: 21673399

Gene position: 572200-571727 (Counterclockwise)

Preceding gene: 21673400

Following gene: 21673398

Centisome position: 26.55

GC content: 55.7

Gene sequence:

>474_bases
GTGTCCAAAAAACAAGGCAAGCCGGAATACGTCACGGCGATCAGCAACCGCAAGGCCCGGTTCGAGTACGAAATTCTCGA
CACGATCGAGGCGGGCATCGAGCTGCTGGGCAGCGAGGTGAAATCGGTGCGACTCGGCAAGGCGAGCCTGAGCGAGAGCT
ACGCCATGATCCACCACGGCCAGGTGTGGCTCGAAAACATGCAGATCACGCCCTACGAACACAACACGCTCGACACGCTC
GAACCCAAACGCAGCCGCCGCCTGCTTTTGCACAAGGCGGAAATCATGCGACTGCAATCGAAAATCAGCGAAAAGGGACT
GACTCTTATTCCGCTCAAAGCTTACTTCAACAAGCGCGGTGTACTCAAGATCGAACTCGGCCTCGCGCGAGGCAAAAAGC
TCTACGACAAGCGCGAGACAATCAAGAATCGAGACGCCAAGCGTCAGCTGCAGCAACTCAGGAAACAGTATTAA

Upstream 100 bases:

>100_bases
TGGTGCGTGTAAAAAAAGCGTTCGACCCTTATCTTGTGCTCAATGTCGGAAACATGATTCCGGCAGAATACTACGAATCC
GAAACCTGAGAGAGAACGCG

Downstream 100 bases:

>100_bases
CCAGACGACATTTCAATTTGCCATGATATTTCCATCCGTCAAGGAACAGCTCGATATCATCGTCAACAACACCGTCGAGG
TCATCAGCACCGACGAACTC

Product: SsrA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 156

Protein sequence:

>157_residues
MSKKQGKPEYVTAISNRKARFEYEILDTIEAGIELLGSEVKSVRLGKASLSESYAMIHHGQVWLENMQITPYEHNTLDTL
EPKRSRRLLLHKAEIMRLQSKISEKGLTLIPLKAYFNKRGVLKIELGLARGKKLYDKRETIKNRDAKRQLQQLRKQY

Sequences:

>Translated_157_residues
MSKKQGKPEYVTAISNRKARFEYEILDTIEAGIELLGSEVKSVRLGKASLSESYAMIHHGQVWLENMQITPYEHNTLDTL
EPKRSRRLLLHKAEIMRLQSKISEKGLTLIPLKAYFNKRGVLKIELGLARGKKLYDKRETIKNRDAKRQLQQLRKQY
>Mature_156_residues
SKKQGKPEYVTAISNRKARFEYEILDTIEAGIELLGSEVKSVRLGKASLSESYAMIHHGQVWLENMQITPYEHNTLDTLE
PKRSRRLLLHKAEIMRLQSKISEKGLTLIPLKAYFNKRGVLKIELGLARGKKLYDKRETIKNRDAKRQLQQLRKQY

Specific function: Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes

COG id: COG0691

COG function: function code O; tmRNA-binding protein

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpB family

Homologues:

Organism=Escherichia coli, GI1788973, Length=144, Percent_Identity=40.2777777777778, Blast_Score=105, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SSRP_CHLTE (Q8KEW8)

Other databases:

- EMBL:   AE006470
- RefSeq:   NP_661464.1
- ProteinModelPortal:   Q8KEW8
- SMR:   Q8KEW8
- GeneID:   1006222
- GenomeReviews:   AE006470_GR
- KEGG:   cte:CT0564
- NMPDR:   fig|194439.1.peg.558
- TIGR:   CT0564
- HOGENOM:   HBG293422
- OMA:   EKYEAGI
- ProtClustDB:   PRK05422
- BioCyc:   CTEP194439:CT_0564-MONOMER
- GO:   GO:0005737
- GO:   GO:0006412
- HAMAP:   MF_00023
- InterPro:   IPR000037
- InterPro:   IPR020081
- Gene3D:   G3DSA:2.40.280.10
- ProDom:   PD004488
- TIGRFAMs:   TIGR00086

Pfam domain/function: PF01668 SmpB; SSF74982 SmpB

EC number: NA

Molecular weight: Translated: 18281; Mature: 18149

Theoretical pI: Translated: 10.61; Mature: 10.61

Prosite motif: PS01317 SSRP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKKQGKPEYVTAISNRKARFEYEILDTIEAGIELLGSEVKSVRLGKASLSESYAMIHHG
CCCCCCCCCEEEHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCC
QVWLENMQITPYEHNTLDTLEPKRSRRLLLHKAEIMRLQSKISEKGLTLIPLKAYFNKRG
EEEEECCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHCCCC
VLKIELGLARGKKLYDKRETIKNRDAKRQLQQLRKQY
EEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHCC
>Mature Secondary Structure 
SKKQGKPEYVTAISNRKARFEYEILDTIEAGIELLGSEVKSVRLGKASLSESYAMIHHG
CCCCCCCCEEEHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCC
QVWLENMQITPYEHNTLDTLEPKRSRRLLLHKAEIMRLQSKISEKGLTLIPLKAYFNKRG
EEEEECCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHCCCC
VLKIELGLARGKKLYDKRETIKNRDAKRQLQQLRKQY
EEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12093901