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The map label for this gene is rfaE [C]

Identifier: 15897833

GI number: 15897833

Start: 809187

End: 809867

Strand: Direct

Name: rfaE [C]

Synonym: SSO0954

Alternate gene names: 15897833

Gene position: 809187-809867 (Clockwise)

Preceding gene: 15897832

Following gene: 15897838

Centisome position: 27.04

GC content: 35.1

Gene sequence:

>681_bases
ATGGATATTGAGGAGTTAAAGAAAAGGATAGAAAAGTACATTAAAGGAATGGATGAACGATTAAAGGACACTAGTAGTGC
CAACAATAAGGTAGTAGAATTGGCTAGATTATATACTGAGGACGCTAAATACTATTTAGAGAAAGGCGATTACATAACCG
CATTAGTTGATGTTGTTTACGCTGAAGGTTTATTGGATGCAAAGGAGATTTATGAGAACAGTGACCCTAAATCTAATGTA
TCAAAAAAGGTATTTGTTGCAGGTACCTTTGATATATTGCATCCAGGGCATATAGAATTCTTGAAAGAGGCGTCAAAGTA
TGGAAGAGTTTACGTAACTGTCGCGAGGGACTCTAATTCAGAGAGAATTAAGGGGAGAAAGCCGATTAACGATGAGCAAA
CTAGGCTAGAAATTATTAAGAGTATAAGATATGTTTTTGATGCAATATTAGGTGATCAAGAGGATTTTCTAAAAAGTGTG
GAAAGAATAAATCCGGATATCATTTTCCTAGGGCCAGATCAGAAAGTTGACGAGGCCAAGCTTCTTGAGGAATTGAAAAA
ACGAGGCTTAAGTCCTCAAATAATCAGATTAAATGAGAGAATAAGGAAATGGTCTCACTCAAGCACAACAGATATAATAA
ATGAAATTAAAAAGAGGTATTGTAACTTAGAACAACGTTAA

Upstream 100 bases:

>100_bases
CACTTAAAGTAGAAGAAGCTACTTCATTCGACTTCGGAAATACACCACATATTATTATAATTCCTGGTAACCTTCATTAT
ATGGAGGCTGATGCTATAAA

Downstream 100 bases:

>100_bases
ACATAAACTTCTATTGTTACCTCATCGCCGTCTTTTAAATTCAATTTTTCTCTCAGATGGAATGGAGAGATTATCTCTAT
TACGCTCTTTGGATGTGTAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MDIEELKKRIEKYIKGMDERLKDTSSANNKVVELARLYTEDAKYYLEKGDYITALVDVVYAEGLLDAKEIYENSDPKSNV
SKKVFVAGTFDILHPGHIEFLKEASKYGRVYVTVARDSNSERIKGRKPINDEQTRLEIIKSIRYVFDAILGDQEDFLKSV
ERINPDIIFLGPDQKVDEAKLLEELKKRGLSPQIIRLNERIRKWSHSSTTDIINEIKKRYCNLEQR

Sequences:

>Translated_226_residues
MDIEELKKRIEKYIKGMDERLKDTSSANNKVVELARLYTEDAKYYLEKGDYITALVDVVYAEGLLDAKEIYENSDPKSNV
SKKVFVAGTFDILHPGHIEFLKEASKYGRVYVTVARDSNSERIKGRKPINDEQTRLEIIKSIRYVFDAILGDQEDFLKSV
ERINPDIIFLGPDQKVDEAKLLEELKKRGLSPQIIRLNERIRKWSHSSTTDIINEIKKRYCNLEQR
>Mature_226_residues
MDIEELKKRIEKYIKGMDERLKDTSSANNKVVELARLYTEDAKYYLEKGDYITALVDVVYAEGLLDAKEIYENSDPKSNV
SKKVFVAGTFDILHPGHIEFLKEASKYGRVYVTVARDSNSERIKGRKPINDEQTRLEIIKSIRYVFDAILGDQEDFLKSV
ERINPDIIFLGPDQKVDEAKLLEELKKRGLSPQIIRLNERIRKWSHSSTTDIINEIKKRYCNLEQR

Specific function: Lipopolysaccharide core biosynthesis. [C]

COG id: COG0615

COG function: function code MI; Cytidylyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789432, Length=140, Percent_Identity=32.1428571428571, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004821
- InterPro:   IPR004820
- InterPro:   IPR014729 [H]

Pfam domain/function: PF01467 CTP_transf_2 [H]

EC number: 2.7.-.- [C]

Molecular weight: Translated: 26289; Mature: 26289

Theoretical pI: Translated: 7.58; Mature: 7.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIEELKKRIEKYIKGMDERLKDTSSANNKVVELARLYTEDAKYYLEKGDYITALVDVVY
CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
AEGLLDAKEIYENSDPKSNVSKKVFVAGTFDILHPGHIEFLKEASKYGRVYVTVARDSNS
HHCCCCHHHHHCCCCCCCCCCCEEEEEEEHHHCCCHHHHHHHHHHHCCEEEEEEEECCCC
ERIKGRKPINDEQTRLEIIKSIRYVFDAILGDQEDFLKSVERINPDIIFLGPDQKVDEAK
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEECCCCCCCHHH
LLEELKKRGLSPQIIRLNERIRKWSHSSTTDIINEIKKRYCNLEQR
HHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MDIEELKKRIEKYIKGMDERLKDTSSANNKVVELARLYTEDAKYYLEKGDYITALVDVVY
CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
AEGLLDAKEIYENSDPKSNVSKKVFVAGTFDILHPGHIEFLKEASKYGRVYVTVARDSNS
HHCCCCHHHHHCCCCCCCCCCCEEEEEEEHHHCCCHHHHHHHHHHHCCEEEEEEEECCCC
ERIKGRKPINDEQTRLEIIKSIRYVFDAILGDQEDFLKSVERINPDIIFLGPDQKVDEAK
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEECCCCCCCHHH
LLEELKKRGLSPQIIRLNERIRKWSHSSTTDIINEIKKRYCNLEQR
HHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]