Click here to switch to the map view.

The map label for this gene is yejH [C]

Identifier: 15897838

GI number: 15897838

Start: 813804

End: 815459

Strand: Direct

Name: yejH [C]

Synonym: SSO0959

Alternate gene names: 15897838

Gene position: 813804-815459 (Clockwise)

Preceding gene: 15897833

Following gene: 15897842

Centisome position: 27.2

GC content: 34.42

Gene sequence:

>1656_bases
ATGTCCTCGAGGACTTTCTATATCAAACAATGGTTAGATGAGGATGACTTCAAGAGGTTACTATTATTCTCGAGATATTT
AGGAAGAGATAGTAGTGGATCTCAGTTTATGATAGATTTGGAAAGAGCTAAAAGAAATGGAGTAAAACCGAATGAGATAG
TAGAAATCTTAGAGGATTATGACGTGCGTCTTTCTCAAGAAGATATTGCAACATTAAGGGAGAAACTCCTTGATTGTTCC
TTTGATATAGAGGCTGGTAAAATAATCATGAAACCATATACTTATCTTGCTGACGTTCTAGAGAAAATTAATGGTAAAAA
TGAGAATTCAGAGCACAGATTCAAAATCAGATATGATAAACAAAATAGAAGATTTATAGTGCGTCCAATGGATTATTTTA
ATCTATTGCAAAAATTGAGAGAAAATGGATTAGAGGTCAAGGAATTAAACCTTTCATTCAAGGAGTTTGAATTCGAATTT
AATGGGCAATTAAGGGAATATCAAAGAGAAGCTATAGAAAATTGGATTAAGAATGGAAACAAGGGGGTTATAGCACTACC
GACAGGCGCTGGAAAGACAGTAGTTGGAATAAAAGGTATAGATATAATCAGAAAGCCCACTCTCATTGTAACCTTTACCA
AAGAGCAGATGTTACAATGGAAAGAAGCTATACTAAAGTTTACCTCAAAAAGACCTGACATTGGTTTATATTACTCAGAA
GAAAAGAGAATAAGACCAATAACCATAACTACCTATCATACAGCATATAGACATCTTCCACAACTATTTGATAAATTTTA
CCTGCTAATAGTTGATGAAGTTCATCACCTACCTGCAGATAAGTTTAAATTAATAGCAGAAGGTTTAATAGCTCCTTATA
GGATGGGTCTTTCAGCGACTCCTCATAGAGAAGATAATAAACACAATGAGTTATTTAGCCTAATAGGGGGAATAATATAT
TATAAGTCAGTTACCGAACTAGCCAAGTTAGGTTATCTCGCCTCCTATGAGATAATTCAGAAAAAAGTAAGGCTAACCTT
AGAAGAGAGGAAGCGATACAATGAGCTATTGAATAGGTTTAAGGCATTATCTAAGGGCAGGAAGGTAAGTGAATTGATAG
AGTTAGTAAAAAAAGGTGATGAAAGTGCTATTGAAGCCATGAGAGTTTATAATGAAATGAGAAAAATAGTGAACTTCGCT
TCAGAGAAAATGAAGGCTTTAGACGAAATACTTAAGTCTGAAAAGGGAAAGATTCTCATATTTACACAGTATATTGATCA
AGCTGAAGAAATTGCTAAGAGATACAATTCTTTACTTTTAACCGGCAAGATGTCTAAAGAGGAAAGGAAGAGAGTTTTAG
TGACGTTTAAAACTATGAATGCAGGGGTTCTTGTTTTAACCACTGTTGGAGATGAGGGAATAGACATTCCGGATGCTAAT
GTAGGGATTATTGTGACTGGGACCAGTTCTAGAAGGCAATTTATTCAAAGATTAGGTAGGATTATGAGACCCTATAATGG
CAAGCAAGCAAAACTTTATGAAATAGTTGTTAGTGGTACTCCAGAGGAATATCAAGCAAAAAAGAGAAAAGAAACTGATA
TTCTCTCATTTGAGGGTATGTCTTATTCATCCTCCGAAAATATCGACAGAGATTAA

Upstream 100 bases:

>100_bases
AATGGTGACAAATACTTTATTTATGATGTAGAGGATATCTCGGAACTTATAAATACTCTAGGTTCTAATTTAAAGGTTAT
ATATGTTGAAGTGATTAAAA

Downstream 100 bases:

>100_bases
AATAAACCTAACCCTTTAGATCGATAATGTTGAGGTAATATAGTAAAATATGGAATATCCGAATAATCTTACTAGAACAT
CTCTATTATCTAAAAAGCAG

Product: DNA repair protein rad25

Products: NA

Alternate protein names: Type III Restriction Res Subunit; DNA Repair Helicase; Helicase Domain-Containing Protein; Helicase Domain Protein; Helicase; ATP-Dependent DNA Helicase; DNA Repair Helicase RAD; Type III Restriction Res Subunit Family; DNA Repair Protein Rad; DNA Repair Helicase Rad; Superfamily II DNA/RNA Helicase; DNA Helicase; DNA Repair Protein RAD; DNA/RNA Helicase; ATP-Dependent Helicase; DNA Repair Protein; DNA/RNA Helicase Superfamily II; Helicase-Like Protein; Helicase Protein; DEAD/DEAH Box Helicase Domain-Containing Protein; DNA Or RNA Helicase Of Superfamily II; DNA/RNA Repair Helicase; DNA-Repair Helicase; Helicase ATP-Dependent; DNA-Repair Protein; Helicase DNA Repair; ATP-Dependet DEAD/DEAH Box Helicase; DNA Or RNA Helicase; Helicase DNA Repair Rad; RAD25-Type DNA Repair Helicase; DNA Repair Related Protein; Restriction; Type I Site-Specific Deoxyribonuclease; DEAD/DEAH Box Helicase-Like; Restriction Endonuclease Family Protein; DNA-Helicase; Nucleic Acid ATP-Dependent Helicase; XPB/RAD25-Related Helicase; DNA Or RNA Helicase Of Superfamily Protein II; DEAD/DEAH Box Helicase

Number of amino acids: Translated: 551; Mature: 550

Protein sequence:

>551_residues
MSSRTFYIKQWLDEDDFKRLLLFSRYLGRDSSGSQFMIDLERAKRNGVKPNEIVEILEDYDVRLSQEDIATLREKLLDCS
FDIEAGKIIMKPYTYLADVLEKINGKNENSEHRFKIRYDKQNRRFIVRPMDYFNLLQKLRENGLEVKELNLSFKEFEFEF
NGQLREYQREAIENWIKNGNKGVIALPTGAGKTVVGIKGIDIIRKPTLIVTFTKEQMLQWKEAILKFTSKRPDIGLYYSE
EKRIRPITITTYHTAYRHLPQLFDKFYLLIVDEVHHLPADKFKLIAEGLIAPYRMGLSATPHREDNKHNELFSLIGGIIY
YKSVTELAKLGYLASYEIIQKKVRLTLEERKRYNELLNRFKALSKGRKVSELIELVKKGDESAIEAMRVYNEMRKIVNFA
SEKMKALDEILKSEKGKILIFTQYIDQAEEIAKRYNSLLLTGKMSKEERKRVLVTFKTMNAGVLVLTTVGDEGIDIPDAN
VGIIVTGTSSRRQFIQRLGRIMRPYNGKQAKLYEIVVSGTPEEYQAKKRKETDILSFEGMSYSSSENIDRD

Sequences:

>Translated_551_residues
MSSRTFYIKQWLDEDDFKRLLLFSRYLGRDSSGSQFMIDLERAKRNGVKPNEIVEILEDYDVRLSQEDIATLREKLLDCS
FDIEAGKIIMKPYTYLADVLEKINGKNENSEHRFKIRYDKQNRRFIVRPMDYFNLLQKLRENGLEVKELNLSFKEFEFEF
NGQLREYQREAIENWIKNGNKGVIALPTGAGKTVVGIKGIDIIRKPTLIVTFTKEQMLQWKEAILKFTSKRPDIGLYYSE
EKRIRPITITTYHTAYRHLPQLFDKFYLLIVDEVHHLPADKFKLIAEGLIAPYRMGLSATPHREDNKHNELFSLIGGIIY
YKSVTELAKLGYLASYEIIQKKVRLTLEERKRYNELLNRFKALSKGRKVSELIELVKKGDESAIEAMRVYNEMRKIVNFA
SEKMKALDEILKSEKGKILIFTQYIDQAEEIAKRYNSLLLTGKMSKEERKRVLVTFKTMNAGVLVLTTVGDEGIDIPDAN
VGIIVTGTSSRRQFIQRLGRIMRPYNGKQAKLYEIVVSGTPEEYQAKKRKETDILSFEGMSYSSSENIDRD
>Mature_550_residues
SSRTFYIKQWLDEDDFKRLLLFSRYLGRDSSGSQFMIDLERAKRNGVKPNEIVEILEDYDVRLSQEDIATLREKLLDCSF
DIEAGKIIMKPYTYLADVLEKINGKNENSEHRFKIRYDKQNRRFIVRPMDYFNLLQKLRENGLEVKELNLSFKEFEFEFN
GQLREYQREAIENWIKNGNKGVIALPTGAGKTVVGIKGIDIIRKPTLIVTFTKEQMLQWKEAILKFTSKRPDIGLYYSEE
KRIRPITITTYHTAYRHLPQLFDKFYLLIVDEVHHLPADKFKLIAEGLIAPYRMGLSATPHREDNKHNELFSLIGGIIYY
KSVTELAKLGYLASYEIIQKKVRLTLEERKRYNELLNRFKALSKGRKVSELIELVKKGDESAIEAMRVYNEMRKIVNFAS
EKMKALDEILKSEKGKILIFTQYIDQAEEIAKRYNSLLLTGKMSKEERKRVLVTFKTMNAGVLVLTTVGDEGIDIPDANV
GIIVTGTSSRRQFIQRLGRIMRPYNGKQAKLYEIVVSGTPEEYQAKKRKETDILSFEGMSYSSSENIDRD

Specific function: Unknown

COG id: COG1061

COG function: function code KL; DNA or RNA helicases of superfamily II

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI4557563, Length=391, Percent_Identity=27.8772378516624, Blast_Score=121, Evalue=1e-27,
Organism=Caenorhabditis elegans, GI17556358, Length=416, Percent_Identity=26.9230769230769, Blast_Score=108, Evalue=8e-24,
Organism=Saccharomyces cerevisiae, GI6322048, Length=392, Percent_Identity=26.7857142857143, Blast_Score=134, Evalue=4e-32,
Organism=Saccharomyces cerevisiae, GI6320539, Length=378, Percent_Identity=23.5449735449735, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI221331068, Length=403, Percent_Identity=27.0471464019851, Blast_Score=123, Evalue=3e-28,
Organism=Drosophila melanogaster, GI24662247, Length=403, Percent_Identity=27.0471464019851, Blast_Score=123, Evalue=3e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 64176; Mature: 64045

Theoretical pI: Translated: 9.73; Mature: 9.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSRTFYIKQWLDEDDFKRLLLFSRYLGRDSSGSQFMIDLERAKRNGVKPNEIVEILEDY
CCCCEEHHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHCCCCCHHHHHHHHHHC
DVRLSQEDIATLREKLLDCSFDIEAGKIIMKPYTYLADVLEKINGKNENSEHRFKIRYDK
CCEECHHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCEEEEEEEC
QNRRFIVRPMDYFNLLQKLRENGLEVKELNLSFKEFEFEFNGQLREYQREAIENWIKNGN
CCCEEEECCHHHHHHHHHHHHCCCEEEEECCCHHHEEEEECCHHHHHHHHHHHHHHHCCC
KGVIALPTGAGKTVVGIKGIDIIRKPTLIVTFTKEQMLQWKEAILKFTSKRPDIGLYYSE
CCEEEEECCCCCEEEEECCCCEEECCEEEEEECHHHHHHHHHHHHHHHCCCCCEEEEECC
EKRIRPITITTYHTAYRHLPQLFDKFYLLIVDEVHHLPADKFKLIAEGLIAPYRMGLSAT
CCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCC
PHREDNKHNELFSLIGGIIYYKSVTELAKLGYLASYEIIQKKVRLTLEERKRYNELLNRF
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KALSKGRKVSELIELVKKGDESAIEAMRVYNEMRKIVNFASEKMKALDEILKSEKGKILI
HHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
FTQYIDQAEEIAKRYNSLLLTGKMSKEERKRVLVTFKTMNAGVLVLTTVGDEGIDIPDAN
EHHHHHHHHHHHHHHHHEEEECCCCHHCCCEEEEEEEECCCCEEEEEEECCCCCCCCCCC
VGIIVTGTSSRRQFIQRLGRIMRPYNGKQAKLYEIVVSGTPEEYQAKKRKETDILSFEGM
EEEEEECCCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHCCCCCEEECCC
SYSSSENIDRD
CCCCCCCCCCC
>Mature Secondary Structure 
SSRTFYIKQWLDEDDFKRLLLFSRYLGRDSSGSQFMIDLERAKRNGVKPNEIVEILEDY
CCCEEHHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHCCCCCHHHHHHHHHHC
DVRLSQEDIATLREKLLDCSFDIEAGKIIMKPYTYLADVLEKINGKNENSEHRFKIRYDK
CCEECHHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCEEEEEEEC
QNRRFIVRPMDYFNLLQKLRENGLEVKELNLSFKEFEFEFNGQLREYQREAIENWIKNGN
CCCEEEECCHHHHHHHHHHHHCCCEEEEECCCHHHEEEEECCHHHHHHHHHHHHHHHCCC
KGVIALPTGAGKTVVGIKGIDIIRKPTLIVTFTKEQMLQWKEAILKFTSKRPDIGLYYSE
CCEEEEECCCCCEEEEECCCCEEECCEEEEEECHHHHHHHHHHHHHHHCCCCCEEEEECC
EKRIRPITITTYHTAYRHLPQLFDKFYLLIVDEVHHLPADKFKLIAEGLIAPYRMGLSAT
CCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCC
PHREDNKHNELFSLIGGIIYYKSVTELAKLGYLASYEIIQKKVRLTLEERKRYNELLNRF
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KALSKGRKVSELIELVKKGDESAIEAMRVYNEMRKIVNFASEKMKALDEILKSEKGKILI
HHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
FTQYIDQAEEIAKRYNSLLLTGKMSKEERKRVLVTFKTMNAGVLVLTTVGDEGIDIPDAN
EHHHHHHHHHHHHHHHHEEEECCCCHHCCCEEEEEEEECCCCEEEEEEECCCCCCCCCCC
VGIIVTGTSSRRQFIQRLGRIMRPYNGKQAKLYEIVVSGTPEEYQAKKRKETDILSFEGM
EEEEEECCCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHCCCCCEEECCC
SYSSSENIDRD
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA