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The map label for this gene is sufB [C]

Identifier: 15897813

GI number: 15897813

Start: 788300

End: 789469

Strand: Direct

Name: sufB [C]

Synonym: SSO0928

Alternate gene names: 15897813

Gene position: 788300-789469 (Clockwise)

Preceding gene: 15897812

Following gene: 15897814

Centisome position: 26.34

GC content: 33.68

Gene sequence:

>1170_bases
GTGCAGTGGCTTAAGTTGGGAGTAGTCGATATACAGTTAGCAAAAAAAGTAATTAATGAAAATTTTACACAAGATAAAGG
AGAGAGGGAAAAAGCATTTTCCTTGTACCTTTCTAAGCCATACCAACTAATACATGATTCGCCAACTATCAAACATTATA
CTGAATGGGACTTGTACGACTCCCTAAATCTTACTAATATTTCTAGACAAGAAGTAAAATATAACGATACCGCAAATGTA
ATTGAAATTATAGACGATACTATAAAAATTCCTAAAAATGATATACAAATAGATGACTTATTAAACGATAGTATTATTAG
TAGTGATGAGCATAAATTAGTCTCACTTGCCTATTCTTTATCTAGAAGGATAACAATAAACAATGAGGGAGAGTATTATG
TTAAGCATGTCCTTAATAAAGACAAGTATTTTTCTCCTTCGCATCTAATAATTAACGTACCTAACGATAAGCAAATTAAG
GTGGTTTATGAAGTCCTAAACCTTAGCGAAAGTTCCTTAATAACACCTATTATATCTGTTAATATAGAAGATAACTCTAG
TTTAGATTTCCAATTTGTGAACTTCTCTAGCGATAACAGTCTCCTTTTCTCGTACATTAAGGCTAACATAAAGGGTACGA
TGCACTCATCTATATTTGTAAACGGTAATAAGATGGGTCATGTTCAATTTAGTACTAGATTAGAGGAGAGTAGCGTAAGT
GAATTTTCGTCAAGAGCTTTTGGAACGCATAGCAATAAGATAGATGTAGTTAATAATGTAATTCATCTAGGCCAGAAGAG
TGTAAGTAATGGCTTTATGAAGGCAATCTCTAACGATCAAGCGTTTACTGTGGTGAGGGGTGTTGCAACTATAGATGAGA
CTGCGATCAATTCTTCCACGTCTATTATTGGTAGATCATTAGTCTTAGGAAAAGACGCTAAAGCAGTAGTTTCTCCCATG
CTTGAAGTAAAGACTGGTAGGGTAGTTATGGCTAAACATTCAGCTGCAGTAAGTAAAATAGATGAAAATCAAATCTTCTA
TCTACAAACTAGAGGACTAAGTAGAAGAGAAGCAGAAGGGATTATAATAAGGGGTTTTATAATTGAAGAGCAGGATCCAG
AAACACTTAAGGATAGGATAGAGGAAATACTAAAGTCTTTAGGATATTAG

Upstream 100 bases:

>100_bases
ATGCTAGTATTAGGGTTCATAGACGAAATCATGAAAGAGCTACCATTTGAGTACGCTACCATGCTAAATAAGGTTATAAA
GTTGGAATTAGATAAGCTAG

Downstream 100 bases:

>100_bases
TTTCGCTCAACTCCCTCTCTATTTGCTTATAATAGAAATTTTCCTATAATATACTACTTAACCGATTTATAAAAGAGGAA
AGTTGGTTAGAGTAATCACT

Product: hypothetical protein

Products: NA

Alternate protein names: Mtu pps1 intein [H]

Number of amino acids: Translated: 389; Mature: 389

Protein sequence:

>389_residues
MQWLKLGVVDIQLAKKVINENFTQDKGEREKAFSLYLSKPYQLIHDSPTIKHYTEWDLYDSLNLTNISRQEVKYNDTANV
IEIIDDTIKIPKNDIQIDDLLNDSIISSDEHKLVSLAYSLSRRITINNEGEYYVKHVLNKDKYFSPSHLIINVPNDKQIK
VVYEVLNLSESSLITPIISVNIEDNSSLDFQFVNFSSDNSLLFSYIKANIKGTMHSSIFVNGNKMGHVQFSTRLEESSVS
EFSSRAFGTHSNKIDVVNNVIHLGQKSVSNGFMKAISNDQAFTVVRGVATIDETAINSSTSIIGRSLVLGKDAKAVVSPM
LEVKTGRVVMAKHSAAVSKIDENQIFYLQTRGLSRREAEGIIIRGFIIEEQDPETLKDRIEEILKSLGY

Sequences:

>Translated_389_residues
MQWLKLGVVDIQLAKKVINENFTQDKGEREKAFSLYLSKPYQLIHDSPTIKHYTEWDLYDSLNLTNISRQEVKYNDTANV
IEIIDDTIKIPKNDIQIDDLLNDSIISSDEHKLVSLAYSLSRRITINNEGEYYVKHVLNKDKYFSPSHLIINVPNDKQIK
VVYEVLNLSESSLITPIISVNIEDNSSLDFQFVNFSSDNSLLFSYIKANIKGTMHSSIFVNGNKMGHVQFSTRLEESSVS
EFSSRAFGTHSNKIDVVNNVIHLGQKSVSNGFMKAISNDQAFTVVRGVATIDETAINSSTSIIGRSLVLGKDAKAVVSPM
LEVKTGRVVMAKHSAAVSKIDENQIFYLQTRGLSRREAEGIIIRGFIIEEQDPETLKDRIEEILKSLGY
>Mature_389_residues
MQWLKLGVVDIQLAKKVINENFTQDKGEREKAFSLYLSKPYQLIHDSPTIKHYTEWDLYDSLNLTNISRQEVKYNDTANV
IEIIDDTIKIPKNDIQIDDLLNDSIISSDEHKLVSLAYSLSRRITINNEGEYYVKHVLNKDKYFSPSHLIINVPNDKQIK
VVYEVLNLSESSLITPIISVNIEDNSSLDFQFVNFSSDNSLLFSYIKANIKGTMHSSIFVNGNKMGHVQFSTRLEESSVS
EFSSRAFGTHSNKIDVVNNVIHLGQKSVSNGFMKAISNDQAFTVVRGVATIDETAINSSTSIIGRSLVLGKDAKAVVSPM
LEVKTGRVVMAKHSAAVSKIDENQIFYLQTRGLSRREAEGIIIRGFIIEEQDPETLKDRIEEILKSLGY

Specific function: Unknown

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DOD-type homing endonuclease domain [H]

Homologues:

Organism=Escherichia coli, GI87081955, Length=132, Percent_Identity=29.5454545454545, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787971, Length=218, Percent_Identity=26.1467889908257, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003586
- InterPro:   IPR003587
- InterPro:   IPR007868
- InterPro:   IPR006142
- InterPro:   IPR004042
- InterPro:   IPR006141
- InterPro:   IPR010231
- InterPro:   IPR000825 [H]

Pfam domain/function: PF05203 Hom_end_hint; PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 43858; Mature: 43858

Theoretical pI: Translated: 6.20; Mature: 6.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQWLKLGVVDIQLAKKVINENFTQDKGEREKAFSLYLSKPYQLIHDSPTIKHYTEWDLYD
CCEEEEEHHHHHHHHHHHHCCCCCCCCCHHHHEEEEECCCHHHHCCCCCCCCEECCCCCC
SLNLTNISRQEVKYNDTANVIEIIDDTIKIPKNDIQIDDLLNDSIISSDEHKLVSLAYSL
CCCCCCCCHHHEECCCCCHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHH
SRRITINNEGEYYVKHVLNKDKYFSPSHLIINVPNDKQIKVVYEVLNLSESSLITPIISV
HEEEEECCCCCCHHHHHHCCCCCCCCCEEEEECCCCCEEEEEEHHHCCCCCCEECEEEEE
NIEDNSSLDFQFVNFSSDNSLLFSYIKANIKGTMHSSIFVNGNKMGHVQFSTRLEESSVS
EECCCCCCEEEEEEECCCCHHEEEEHHHHCCEEEEEEEEECCCEEEEEEEECCCCHHHHH
EFSSRAFGTHSNKIDVVNNVIHLGQKSVSNGFMKAISNDQAFTVVRGVATIDETAINSST
HHHHHHCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCH
SIIGRSLVLGKDAKAVVSPMLEVKTGRVVMAKHSAAVSKIDENQIFYLQTRGLSRREAEG
HHHHEEEEECCCHHHHHHHHHHCCCCCEEEEECHHHHHHCCCCCEEEEEECCCCCCCCCC
IIIRGFIIEEQDPETLKDRIEEILKSLGY
EEEEEEEEECCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQWLKLGVVDIQLAKKVINENFTQDKGEREKAFSLYLSKPYQLIHDSPTIKHYTEWDLYD
CCEEEEEHHHHHHHHHHHHCCCCCCCCCHHHHEEEEECCCHHHHCCCCCCCCEECCCCCC
SLNLTNISRQEVKYNDTANVIEIIDDTIKIPKNDIQIDDLLNDSIISSDEHKLVSLAYSL
CCCCCCCCHHHEECCCCCHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHH
SRRITINNEGEYYVKHVLNKDKYFSPSHLIINVPNDKQIKVVYEVLNLSESSLITPIISV
HEEEEECCCCCCHHHHHHCCCCCCCCCEEEEECCCCCEEEEEEHHHCCCCCCEECEEEEE
NIEDNSSLDFQFVNFSSDNSLLFSYIKANIKGTMHSSIFVNGNKMGHVQFSTRLEESSVS
EECCCCCCEEEEEEECCCCHHEEEEHHHHCCEEEEEEEEECCCEEEEEEEECCCCHHHHH
EFSSRAFGTHSNKIDVVNNVIHLGQKSVSNGFMKAISNDQAFTVVRGVATIDETAINSST
HHHHHHCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCH
SIIGRSLVLGKDAKAVVSPMLEVKTGRVVMAKHSAAVSKIDENQIFYLQTRGLSRREAEG
HHHHEEEEECCCHHHHHHHHHHCCCCCEEEEECHHHHHHCCCCCEEEEEECCCCCCCCCC
IIIRGFIIEEQDPETLKDRIEEILKSLGY
EEEEEEEEECCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]