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The map label for this gene is rpl10e [H]

Identifier: 15897239

GI number: 15897239

Start: 251593

End: 252129

Strand: Reverse

Name: rpl10e [H]

Synonym: SSO0294

Alternate gene names: 15897239

Gene position: 252129-251593 (Counterclockwise)

Preceding gene: 15897240

Following gene: 15897238

Centisome position: 8.43

GC content: 37.62

Gene sequence:

>537_bases
ATGCCACTACGACCTGGAAGATGTTATAGACATTTCTCCGGTCCTGCCTATACCAGGAAGGAATATATCCCTGGTATTCC
ACAGCCAAAGATAACTAAGTTCACTTCTGGAAATCCAAATGGAGATTATGACTATGAGGTTAGGTTAATTACTACTGAGA
TAGGGCAAATAAGACATAATGCTTTAGAGGCTGTCAGAACTCTTACTCTTAAGACGTTATCTAAGAAAACTGGAAGTGAA
ACTTCGTTCTTTATGTGGATATTAAAGTATCCCCATCATGTGCTAAGAGAGAATAAAATGATGGCGTTTGCTGGAGCTGA
TAGATTGCAAGATGGAATGAGATTGTCTTTTGGTACACCAATAGGTACTGCTGCTAGGATTGAAAAACTGGGAGAAACTT
TAATTGTAATAAAAGTTAAAAAAGAACATCTAGAATTTGCAAAGGAGGCGTTAAAGATAGCATCAAAGAAACTACCTTTG
CGTACTAGAATTGAGATCATTCCATTAAGGCTCGTAAGACAGGAGGTTCAAAGTTGA

Upstream 100 bases:

>100_bases
CAGACGAGATATTGGCACATATAAAAGCGCTTCAATCGTCATTTGATGCTATAAGTTAAATATTTAGTCTTTAATATAAA
TGTTTATATCGTGATGTTAA

Downstream 100 bases:

>100_bases
GCTATAATTTCGAAGAGGAACGTGTAATCAAGGAGATACGTGAAAAGAACGCGAAACGTGTTCTTTTACAATTTCCTGAA
GGATTAAAGTATTTTTCTAT

Product: 50S ribosomal protein L10e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 177

Protein sequence:

>178_residues
MPLRPGRCYRHFSGPAYTRKEYIPGIPQPKITKFTSGNPNGDYDYEVRLITTEIGQIRHNALEAVRTLTLKTLSKKTGSE
TSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGETLIVIKVKKEHLEFAKEALKIASKKLPL
RTRIEIIPLRLVRQEVQS

Sequences:

>Translated_178_residues
MPLRPGRCYRHFSGPAYTRKEYIPGIPQPKITKFTSGNPNGDYDYEVRLITTEIGQIRHNALEAVRTLTLKTLSKKTGSE
TSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGETLIVIKVKKEHLEFAKEALKIASKKLPL
RTRIEIIPLRLVRQEVQS
>Mature_177_residues
PLRPGRCYRHFSGPAYTRKEYIPGIPQPKITKFTSGNPNGDYDYEVRLITTEIGQIRHNALEAVRTLTLKTLSKKTGSET
SFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGETLIVIKVKKEHLEFAKEALKIASKKLPLR
TRIEIIPLRLVRQEVQS

Specific function: Unknown

COG id: COG0197

COG function: function code J; Ribosomal protein L16/L10E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L10e family [H]

Homologues:

Organism=Homo sapiens, GI18152783, Length=169, Percent_Identity=37.8698224852071, Blast_Score=109, Evalue=1e-24,
Organism=Homo sapiens, GI223890243, Length=169, Percent_Identity=37.2781065088757, Blast_Score=108, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI17533037, Length=164, Percent_Identity=36.5853658536585, Blast_Score=107, Evalue=3e-24,
Organism=Saccharomyces cerevisiae, GI6323104, Length=167, Percent_Identity=34.7305389221557, Blast_Score=102, Evalue=3e-23,
Organism=Drosophila melanogaster, GI221513696, Length=169, Percent_Identity=37.2781065088757, Blast_Score=107, Evalue=3e-24,
Organism=Drosophila melanogaster, GI221513692, Length=169, Percent_Identity=37.2781065088757, Blast_Score=107, Evalue=3e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001197
- InterPro:   IPR016180
- InterPro:   IPR022981
- InterPro:   IPR018255 [H]

Pfam domain/function: PF00252 Ribosomal_L16 [H]

EC number: NA

Molecular weight: Translated: 20363; Mature: 20232

Theoretical pI: Translated: 10.69; Mature: 10.69

Prosite motif: PS01257 RIBOSOMAL_L10E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLRPGRCYRHFSGPAYTRKEYIPGIPQPKITKFTSGNPNGDYDYEVRLITTEIGQIRHN
CCCCCCCHHHCCCCCCCCHHHHCCCCCCCCEEEECCCCCCCCCCEEEEEEEEHHHHHHHH
ALEAVRTLTLKTLSKKTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTP
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHCCCEEEEECCHHHCCCCEEECCCC
IGTAARIEKLGETLIVIKVKKEHLEFAKEALKIASKKLPLRTRIEIIPLRLVRQEVQS
CCHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHHHCCCCHHHHEEHHHHHHHHHHCC
>Mature Secondary Structure 
PLRPGRCYRHFSGPAYTRKEYIPGIPQPKITKFTSGNPNGDYDYEVRLITTEIGQIRHN
CCCCCCHHHCCCCCCCCHHHHCCCCCCCCEEEECCCCCCCCCCEEEEEEEEHHHHHHHH
ALEAVRTLTLKTLSKKTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTP
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHCCCEEEEECCHHHCCCCEEECCCC
IGTAARIEKLGETLIVIKVKKEHLEFAKEALKIASKKLPLRTRIEIIPLRLVRQEVQS
CCHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHHHCCCCHHHHEEHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA