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The map label for this gene is clpS

Identifier: 16126706

GI number: 16126706

Start: 2673445

End: 2673804

Strand: Direct

Name: clpS

Synonym: CC_2467

Alternate gene names: 16126706

Gene position: 2673445-2673804 (Clockwise)

Preceding gene: 16126705

Following gene: 16126707

Centisome position: 66.55

GC content: 57.5

Gene sequence:

>360_bases
GTGATTTGCCCGCCGGGAGAGAACAAGTCGATGGCCGAGCGGAAGCAAGGCGGACAAGGCAACGGCGTTGGGTCGTCGGT
CGTCACGGAAGTGAAGCCGAAGACGCAGAAGCCTTCGCTCTATCGAGTTCTGATTCTCAACGACGACTACACACCGATGG
AGTTCGTCGTCTACGTGCTCGAGCGGTTCTTTAACAAGTCGCGTGAAGACGCTACTCGCATCATGCTGCACGTTCACCAG
AACGGTGTCGGTGTCTGCGGTGTCTACACTTACGAAGTCGCAGAAACCAAGGTCGCGCAGGTCATCGACTCGGCGCGACG
TCATCAGCACCCCCTGCAGTGCACCATGGAAAAGGACTGA

Upstream 100 bases:

>100_bases
GTGAAGCCGAAAACCGAGGCGCCCCTGTGCTAAAGCGGCGCAGCGGTGCTTCGGGCTCTTCCAAAGCCGCCGCGTTTCCA
TATCTAATTCAGGCAGGCGG

Downstream 100 bases:

>100_bases
GGAGCCTCCCCCGTTGCCCTCTTTTTCGCGCCCCCTGGAAGAGTCCCTGCACCGCGCCGTCGCGTACGCCAACCAGCGTA
AGCACGAGTACGCCACGCTG

Product: ATP-dependent Clp protease adaptor protein ClpS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 119; Mature: 119

Protein sequence:

>119_residues
MICPPGENKSMAERKQGGQGNGVGSSVVTEVKPKTQKPSLYRVLILNDDYTPMEFVVYVLERFFNKSREDATRIMLHVHQ
NGVGVCGVYTYEVAETKVAQVIDSARRHQHPLQCTMEKD

Sequences:

>Translated_119_residues
MICPPGENKSMAERKQGGQGNGVGSSVVTEVKPKTQKPSLYRVLILNDDYTPMEFVVYVLERFFNKSREDATRIMLHVHQ
NGVGVCGVYTYEVAETKVAQVIDSARRHQHPLQCTMEKD
>Mature_119_residues
MICPPGENKSMAERKQGGQGNGVGSSVVTEVKPKTQKPSLYRVLILNDDYTPMEFVVYVLERFFNKSREDATRIMLHVHQ
NGVGVCGVYTYEVAETKVAQVIDSARRHQHPLQCTMEKD

Specific function: Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation

COG id: COG2127

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ClpS family

Homologues:

Organism=Escherichia coli, GI1787108, Length=89, Percent_Identity=55.0561797752809, Blast_Score=108, Evalue=7e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CLPS_CAUCR (Q9A5I0)

Other databases:

- EMBL:   AE005673
- PIR:   B87555
- RefSeq:   NP_421270.1
- PDB:   3DNJ
- PDB:   3G19
- PDB:   3G1B
- PDB:   3G3P
- PDB:   3GQ0
- PDB:   3GQ1
- PDB:   3GW1
- PDBsum:   3DNJ
- PDBsum:   3G19
- PDBsum:   3G1B
- PDBsum:   3G3P
- PDBsum:   3GQ0
- PDBsum:   3GQ1
- PDBsum:   3GW1
- ProteinModelPortal:   Q9A5I0
- SMR:   Q9A5I0
- DIP:   DIP-48881N
- GeneID:   943645
- GenomeReviews:   AE005673_GR
- KEGG:   ccr:CC_2467
- NMPDR:   fig|190650.1.peg.2450
- TIGR:   CC_2467
- HOGENOM:   HBG644923
- OMA:   FVIHILE
- ProtClustDB:   PRK00033
- HAMAP:   MF_00302
- InterPro:   IPR022935
- InterPro:   IPR003769
- InterPro:   IPR014719
- Gene3D:   G3DSA:3.30.1390.10

Pfam domain/function: PF02617 ClpS; SSF54736 Ribosomal_L7/12_C/ClpS-like

EC number: NA

Molecular weight: Translated: 13414; Mature: 13414

Theoretical pI: Translated: 8.07; Mature: 8.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MICPPGENKSMAERKQGGQGNGVGSSVVTEVKPKTQKPSLYRVLILNDDYTPMEFVVYVL
CCCCCCCCCCHHHHHCCCCCCCCCCHHHCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHH
ERFFNKSREDATRIMLHVHQNGVGVCGVYTYEVAETKVAQVIDSARRHQHPLQCTMEKD
HHHHCCCCCCHHEEEEEECCCCCEEEEEEEEHHHHHHHHHHHHHHHHCCCCCEEEECCC
>Mature Secondary Structure
MICPPGENKSMAERKQGGQGNGVGSSVVTEVKPKTQKPSLYRVLILNDDYTPMEFVVYVL
CCCCCCCCCCHHHHHCCCCCCCCCCHHHCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHH
ERFFNKSREDATRIMLHVHQNGVGVCGVYTYEVAETKVAQVIDSARRHQHPLQCTMEKD
HHHHCCCCCCHHEEEEEECCCCCEEEEEEEEHHHHHHHHHHHHHHHHCCCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11259647