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The map label for this gene is sodA [H]

Identifier: 16126021

GI number: 16126021

Start: 1960793

End: 1961509

Strand: Direct

Name: sodA [H]

Synonym: CC_1777

Alternate gene names: 16126021

Gene position: 1960793-1961509 (Clockwise)

Preceding gene: 16126020

Following gene: 16126022

Centisome position: 48.81

GC content: 65.13

Gene sequence:

>717_bases
ATGCAACGCTTGCTGACCGCCATCGCGATCTCGGCTTTTGGGATCACGACTCCGGTTCTCGCCCAGACCTCGCCAGCGCC
GCAGGTCGCTGCTGCGCCACAACCCGCATTCACGCTGGCGCCCCTCCCCTACGTCTATGAGGCCCTCTCGCCGGTCATCG
ACACCGAGACCATGCGCATCCACCACGGTCGCCACCATCAGGCCTATGTGAACGCGCTGAACGGCGCCGTGGCCGTAACC
CCCGCCTTGCAGGGAAAGTCTCTGGATGCGGTCCTGTCGGAGGTCTCGCGGCATCCGCCGGTCGTGCGCAACAACGCCGG
TGGTCACTATAATCACACCCTCTTCTGGAGCTTGATGGCGCCTTCGGGCGCCGGCGGCGCGCCGTCTTCGAAGCTGCTCG
CCCAGATCGATAAGGATTTCGGGAGTCTGGACGCCTTCAAGAAGGCCTTCGAGACGGCTGGCCTTCAGCGCTTCGGCTCG
GGCTGGGCCTGGCTGATCTGGAGCGAGGGAAAGCTCCGCGTCGTCAGCACGCCCAACCAGGACAATCCGCTGATGGACGA
CGCGCCGGTCAAGGGCGCGCCGATCCTGGCCAATGATGTCTGGGAACACGCCTACTACCTGAAACACCAGAACAACCGCG
GCGCCTATCTCGGCGGCTGGTGGCAGGTCGTGAACTGGAACAAGGCCAACGCCCTGTTCGACGCCGCCGCGCGCTAG

Upstream 100 bases:

>100_bases
GCGATTACCCCCCGCACCGGCCGAGCGCCGTCCCGGCGTCGCGAGCCTTGTCGGAGGTTCGCGACGCCAAAAGCCTTCTT
CGCCTCAAAGGGAGCCCCTC

Downstream 100 bases:

>100_bases
GCGCGCACCTCACAAGAAAAAACCTTCTCTCAAAGCCGCCCGGGGGCGCTAAGGACACGATGAAAACAGCACTCTTTCTC
GGTAGCGCCATCGCGGTGAT

Product: superoxide dismutase, Mn

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MQRLLTAIAISAFGITTPVLAQTSPAPQVAAAPQPAFTLAPLPYVYEALSPVIDTETMRIHHGRHHQAYVNALNGAVAVT
PALQGKSLDAVLSEVSRHPPVVRNNAGGHYNHTLFWSLMAPSGAGGAPSSKLLAQIDKDFGSLDAFKKAFETAGLQRFGS
GWAWLIWSEGKLRVVSTPNQDNPLMDDAPVKGAPILANDVWEHAYYLKHQNNRGAYLGGWWQVVNWNKANALFDAAAR

Sequences:

>Translated_238_residues
MQRLLTAIAISAFGITTPVLAQTSPAPQVAAAPQPAFTLAPLPYVYEALSPVIDTETMRIHHGRHHQAYVNALNGAVAVT
PALQGKSLDAVLSEVSRHPPVVRNNAGGHYNHTLFWSLMAPSGAGGAPSSKLLAQIDKDFGSLDAFKKAFETAGLQRFGS
GWAWLIWSEGKLRVVSTPNQDNPLMDDAPVKGAPILANDVWEHAYYLKHQNNRGAYLGGWWQVVNWNKANALFDAAAR
>Mature_238_residues
MQRLLTAIAISAFGITTPVLAQTSPAPQVAAAPQPAFTLAPLPYVYEALSPVIDTETMRIHHGRHHQAYVNALNGAVAVT
PALQGKSLDAVLSEVSRHPPVVRNNAGGHYNHTLFWSLMAPSGAGGAPSSKLLAQIDKDFGSLDAFKKAFETAGLQRFGS
GWAWLIWSEGKLRVVSTPNQDNPLMDDAPVKGAPILANDVWEHAYYLKHQNNRGAYLGGWWQVVNWNKANALFDAAAR

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=203, Percent_Identity=39.9014778325123, Blast_Score=150, Evalue=7e-37,
Organism=Homo sapiens, GI67782305, Length=203, Percent_Identity=39.9014778325123, Blast_Score=150, Evalue=7e-37,
Organism=Homo sapiens, GI67782309, Length=207, Percent_Identity=32.8502415458937, Blast_Score=105, Evalue=2e-23,
Organism=Escherichia coli, GI1790342, Length=206, Percent_Identity=48.5436893203884, Blast_Score=194, Evalue=4e-51,
Organism=Escherichia coli, GI1787946, Length=192, Percent_Identity=44.7916666666667, Blast_Score=159, Evalue=2e-40,
Organism=Caenorhabditis elegans, GI17506561, Length=209, Percent_Identity=37.799043062201, Blast_Score=143, Evalue=9e-35,
Organism=Caenorhabditis elegans, GI17569479, Length=205, Percent_Identity=37.0731707317073, Blast_Score=139, Evalue=1e-33,
Organism=Saccharomyces cerevisiae, GI6321796, Length=224, Percent_Identity=38.3928571428571, Blast_Score=128, Evalue=9e-31,
Organism=Drosophila melanogaster, GI17136812, Length=203, Percent_Identity=40.3940886699507, Blast_Score=150, Evalue=9e-37,

Paralogues:

None

Copy number: 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 25725; Mature: 25725

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: PS00088 SOD_MN ; PS00213 LIPOCALIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRLLTAIAISAFGITTPVLAQTSPAPQVAAAPQPAFTLAPLPYVYEALSPVIDTETMRI
CHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHCCCEEEE
HHGRHHQAYVNALNGAVAVTPALQGKSLDAVLSEVSRHPPVVRNNAGGHYNHTLFWSLMA
ECCCCHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHCCCCEECCCCCCCCCEEEEEEEC
PSGAGGAPSSKLLAQIDKDFGSLDAFKKAFETAGLQRFGSGWAWLIWSEGKLRVVSTPNQ
CCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCCC
DNPLMDDAPVKGAPILANDVWEHAYYLKHQNNRGAYLGGWWQVVNWNKANALFDAAAR
CCCCCCCCCCCCCCCHHHHHHHHHEEEEECCCCCCEEECEEEEEECCCHHHHHHHCCC
>Mature Secondary Structure
MQRLLTAIAISAFGITTPVLAQTSPAPQVAAAPQPAFTLAPLPYVYEALSPVIDTETMRI
CHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHCCCEEEE
HHGRHHQAYVNALNGAVAVTPALQGKSLDAVLSEVSRHPPVVRNNAGGHYNHTLFWSLMA
ECCCCHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHCCCCEECCCCCCCCCEEEEEEEC
PSGAGGAPSSKLLAQIDKDFGSLDAFKKAFETAGLQRFGSGWAWLIWSEGKLRVVSTPNQ
CCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCCC
DNPLMDDAPVKGAPILANDVWEHAYYLKHQNNRGAYLGGWWQVVNWNKANALFDAAAR
CCCCCCCCCCCCCCCHHHHHHHHHEEEEECCCCCCEEECEEEEEECCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9074511 [H]