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The map label for this gene is ydfH [C]

Identifier: 16126020

GI number: 16126020

Start: 1959998

End: 1960663

Strand: Direct

Name: ydfH [C]

Synonym: CC_1776

Alternate gene names: 16126020

Gene position: 1959998-1960663 (Clockwise)

Preceding gene: 16126019

Following gene: 16126021

Centisome position: 48.79

GC content: 66.07

Gene sequence:

>666_bases
ATGATCCGCTCAGCCCCCAACGCCGCCGCTGCGGTCGCCGTGCATCTTCGCGACCAGATCGTTCAGGGCCTGCTCCGCCC
AGGCACACTTCTGCGCCAGGAAGCCGTCGCCGCAGAACTGGGCGTCAGCCGCATCCCCGTCTTCCACGCGTTGGCCAAAC
TGGAGTCCGAAGGTCTGATCGAGATCTCGCCCAACCGCGCGGCGTTCGTTTCCACCCCGAGCGTTGCCCGTTGCCTTGAG
ATCTTCGACCTGCGTCGCCTCCTGGAAAGCGACATGCTGGCTCGGTCGATCGGCCAACACACCCCCAAGACCCTGCGCGC
GGTCAGGGCGGTGATGCTTGAGTTGGAAGACGACGAAGGCCCTCGCGCCTGGATCGCGGCTGACCGTCGCTACTACGCTG
CGCTCTACGCGCCGGCTGACCGTGATCTGACCTTGATGACGGTGCAGAACCTGCGCAACGCGGTCGATCGCATCTACCTG
GCCAGCGAACTGCCCGTCCTCGAACGCGAGGCCTGGCTCGGGCGCTATCAAGGCCTGTTTGACGCTGTCGCGGCGGGCGA
CCTCGAGCGTTCAGCCCTGCTGCTCGGCCAAAACATCCAAGCCATGCAGTCGCTGGTCGCCAGCCTTTTGCCGGACCGAC
CCGCCAACGGAACGACGGGCGCCTAG

Upstream 100 bases:

>100_bases
AGATCACATCGGATAGCCCCATGCCTTCCTTGCGCTCCCAGTCCGGACCTGTTCCGGCGCGCCTGCCTCATGCCGTCCTC
GTCTTAGAGGGGCCGCGCGC

Downstream 100 bases:

>100_bases
CGCCCGGTCGTGGACGGTGTTGCGGCGTGGCGATTACCCCCCGCACCGGCCGAGCGCCGTCCCGGCGTCGCGAGCCTTGT
CGGAGGTTCGCGACGCCAAA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator; Transcriptional Regulator GntR Family Protein; GntR Family Regulatory Protein; Regulatory Protein GntR; Transcriptional Regulator Gntr Family; Transcription Regulator Protein; Regulator PutR For Proline Utilization GntR Family; Regulatory Protein GntR HTH

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MIRSAPNAAAAVAVHLRDQIVQGLLRPGTLLRQEAVAAELGVSRIPVFHALAKLESEGLIEISPNRAAFVSTPSVARCLE
IFDLRRLLESDMLARSIGQHTPKTLRAVRAVMLELEDDEGPRAWIAADRRYYAALYAPADRDLTLMTVQNLRNAVDRIYL
ASELPVLEREAWLGRYQGLFDAVAAGDLERSALLLGQNIQAMQSLVASLLPDRPANGTTGA

Sequences:

>Translated_221_residues
MIRSAPNAAAAVAVHLRDQIVQGLLRPGTLLRQEAVAAELGVSRIPVFHALAKLESEGLIEISPNRAAFVSTPSVARCLE
IFDLRRLLESDMLARSIGQHTPKTLRAVRAVMLELEDDEGPRAWIAADRRYYAALYAPADRDLTLMTVQNLRNAVDRIYL
ASELPVLEREAWLGRYQGLFDAVAAGDLERSALLLGQNIQAMQSLVASLLPDRPANGTTGA
>Mature_221_residues
MIRSAPNAAAAVAVHLRDQIVQGLLRPGTLLRQEAVAAELGVSRIPVFHALAKLESEGLIEISPNRAAFVSTPSVARCLE
IFDLRRLLESDMLARSIGQHTPKTLRAVRAVMLELEDDEGPRAWIAADRRYYAALYAPADRDLTLMTVQNLRNAVDRIYL
ASELPVLEREAWLGRYQGLFDAVAAGDLERSALLLGQNIQAMQSLVASLLPDRPANGTTGA

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787821, Length=201, Percent_Identity=27.363184079602, Blast_Score=64, Evalue=5e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24132; Mature: 24132

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRSAPNAAAAVAVHLRDQIVQGLLRPGTLLRQEAVAAELGVSRIPVFHALAKLESEGLI
CCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCEE
EISPNRAAFVSTPSVARCLEIFDLRRLLESDMLARSIGQHTPKTLRAVRAVMLELEDDEG
EECCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
PRAWIAADRRYYAALYAPADRDLTLMTVQNLRNAVDRIYLASELPVLEREAWLGRYQGLF
CEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
DAVAAGDLERSALLLGQNIQAMQSLVASLLPDRPANGTTGA
HHHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MIRSAPNAAAAVAVHLRDQIVQGLLRPGTLLRQEAVAAELGVSRIPVFHALAKLESEGLI
CCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCEE
EISPNRAAFVSTPSVARCLEIFDLRRLLESDMLARSIGQHTPKTLRAVRAVMLELEDDEG
EECCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
PRAWIAADRRYYAALYAPADRDLTLMTVQNLRNAVDRIYLASELPVLEREAWLGRYQGLF
CEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
DAVAAGDLERSALLLGQNIQAMQSLVASLLPDRPANGTTGA
HHHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA