Click here to switch to the map view.

The map label for this gene is rpoZ

Identifier: 13476435

GI number: 13476435

Start: 6422449

End: 6422850

Strand: Direct

Name: rpoZ

Synonym: mlr7753

Alternate gene names: 13476435

Gene position: 6422449-6422850 (Clockwise)

Preceding gene: 13476432

Following gene: 13476436

Centisome position: 91.28

GC content: 61.94

Gene sequence:

>402_bases
ATGGCCCGCGTAACCGTTGAAGATTGCATCGACAAGGTCGACAACCGCTTCGAGCTGGTGCTTTTGGCCGGCCACCGTGC
TCGCCAGATCAGCCAGGGCGCACAGATCACCGTTCCTCGCGACAACGACAAGAACCCGGTCATCGCCTTGCGCGAGATCG
CCGACGAGACGCTGTCGCCCGACGACCTCAAGGAAGATCTGATCCATTCGCTGCAGAAGCATGTCGAGGTCGACGAGCCC
GAGGCCGATGGCGAGGTGATCGCCGATCAGACCGGCGCCGCTGTCGCGGCCACCGAAACCGACGACGCCGAGGACAACAT
CACCTTCGATCGCATGACTGAGGAAGACCTGCTGGCCGGCATCGAAGGTCTGGTACCGCCGGAAAAGAGCGACGACTACT
AA

Upstream 100 bases:

>100_bases
CCAATAGCCCCGCCAATGCCATGATGCTTGTATTTTGGCGGCGTTCGGGTTATGGACCGCGCCTGTTTTCCATCAAATCC
AGGCATGAAAGGGGCAGTCC

Downstream 100 bases:

>100_bases
GAGAGTTTTCTGGACCTGCCCGGAACACGTTTCCGGCACTTCCGTCCCGGCAGTTTCGTGGCTATCTATGACATGCGCCG
TACAGCAGTGCGGCGCATGA

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 133; Mature: 132

Protein sequence:

>133_residues
MARVTVEDCIDKVDNRFELVLLAGHRARQISQGAQITVPRDNDKNPVIALREIADETLSPDDLKEDLIHSLQKHVEVDEP
EADGEVIADQTGAAVAATETDDAEDNITFDRMTEEDLLAGIEGLVPPEKSDDY

Sequences:

>Translated_133_residues
MARVTVEDCIDKVDNRFELVLLAGHRARQISQGAQITVPRDNDKNPVIALREIADETLSPDDLKEDLIHSLQKHVEVDEP
EADGEVIADQTGAAVAATETDDAEDNITFDRMTEEDLLAGIEGLVPPEKSDDY
>Mature_132_residues
ARVTVEDCIDKVDNRFELVLLAGHRARQISQGAQITVPRDNDKNPVIALREIADETLSPDDLKEDLIHSLQKHVEVDEPE
ADGEVIADQTGAAVAATETDDAEDNITFDRMTEEDLLAGIEGLVPPEKSDDY

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

Organism=Escherichia coli, GI1790081, Length=54, Percent_Identity=59.2592592592593, Blast_Score=64, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_RHILO (Q985B3)

Other databases:

- EMBL:   BA000012
- RefSeq:   NP_108005.1
- GeneID:   1230660
- GenomeReviews:   BA000012_GR
- KEGG:   mlo:mlr7753
- NMPDR:   fig|266835.1.peg.6106
- HOGENOM:   HBG742204
- OMA:   KVDNRFE
- ProtClustDB:   PRK00392
- BRENDA:   2.7.7.6
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 14638; Mature: 14507

Theoretical pI: Translated: 3.90; Mature: 3.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARVTVEDCIDKVDNRFELVLLAGHRARQISQGAQITVPRDNDKNPVIALREIADETLSP
CCCCCHHHHHHHCCCCEEEEEECCCHHHHHCCCCEEEECCCCCCCCEEHHHHHHHHCCCC
DDLKEDLIHSLQKHVEVDEPEADGEVIADQTGAAVAATETDDAEDNITFDRMTEEDLLAG
CHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEEECCCCCCCCCCCHHHCCHHHHHHH
IEGLVPPEKSDDY
HHCCCCCCCCCCC
>Mature Secondary Structure 
ARVTVEDCIDKVDNRFELVLLAGHRARQISQGAQITVPRDNDKNPVIALREIADETLSP
CCCCHHHHHHHCCCCEEEEEECCCHHHHHCCCCEEEECCCCCCCCEEHHHHHHHHCCCC
DDLKEDLIHSLQKHVEVDEPEADGEVIADQTGAAVAATETDDAEDNITFDRMTEEDLLAG
CHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEEECCCCCCCCCCCHHHCCHHHHHHH
IEGLVPPEKSDDY
HHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11214968