BacMap

Definition	Mesorhizobium loti MAFF303099 chromosome, complete genome.
Accession	NC_002678
Length	7,036,071

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The map label for this gene is rbsA [H]

Identifier: 13476301

GI number: 13476301

Start: 6269617

End: 6270474

Strand: Direct

Name: rbsA [H]

Synonym: mlr7585

Alternate gene names: 13476301

Gene position: 6269617-6270474 (Clockwise)

Preceding gene: 13476300

Following gene: 13476302

Centisome position: 89.11

GC content: 64.45

Gene sequence:

>858_bases
GTGGAAAGTGCTGCTCACCGGTGTGTTGATCATCGGCGCCGTGGCGGTCGACCAATGGATCAGAAAGGTTTCGGCATGAC
CCAGGACCCCATTCTCACCGCGCGTGGCCTGGTCAAGCGCTATGGCCGCGTCACTGCCCTCGACAATGCCGACTTCGACC
TCTATCCCGGCGAAATCCTCGCCGTCATCGGCGACAACGGCGCCGGCAAGTCGTCGCTCATCAAGGCGATTTCAGGCGCT
GTCGTGCCCGACGAAGGCGAAATCCAGCTTGAAGGCAAAACCGTTGCCTTCAAGTCGCCGATGGAGGCCCGCGAAGCCGG
TATCGAGACCGTCTACCAGAACCTCGCTCTGTCGCCGGCTCTGTCGATCGCCGACAACATGTTCCTCGGCCGCGAGATCC
GCAAACCCGGCTTCCTCGGGCAATGGCTGCGTATGCTCGACCGTCCGGCGATGGAAAAGCGCGCCCGCGACAAGCTCACC
GAACTCGGCCTGATGACCATCCAGAACATCGGCCAGGCGGTGGAAACGCTCTCGGGCGGCCAGCGCCAGGGTGTCGCGGT
GGCGCGCGCCGCTGCCTTCGGCAGCCGCGTGGTGATCATGGACGAGCCGACGGCGGCCCTTGGCGTCAAGGAGAGCCGCC
GTGTGCTCGAACTGATCCTCGACGTGAAAAAACGCGGCCTGCCGATCGTGCTGATCTCGCACAACATGCCGCATGTCTTC
GAGGTGGCCGACCGCGTCCACATTCATCGCCTCGGCCGTCGCCTCGCCGTCATCGATCCCAAGCAATATACGATGTCCGA
CGCCGTCGCCTTCATGACCGGCGCCAAGGCGCCTCCAGAGGCTGCGCTCGCCGCCTGA

Upstream 100 bases:

>100_bases
CCCTCTTCGGCGGGCGCGGCTCGATCCTGGGCACGCTGTTCGGCGCGATGATCGTCGGCGTCGTCTCCATGGGCCTCAAC
ATGCTGGGCGCCGACCCGCA

Downstream 100 bases:

>100_bases
TTGTCAAATTGCCGCAGGGTAAGCTCGCGGGCGTTTCATCTAAATCGATTGAATATATGTTGCGATGCGGTAACATGGGC
TGGGATGAATGGTGAAAGCC

Product: sugar ABC transporter, ATP binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 285

Protein sequence:

>285_residues
MESAAHRCVDHRRRGGRPMDQKGFGMTQDPILTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGA
VVPDEGEIQLEGKTVAFKSPMEAREAGIETVYQNLALSPALSIADNMFLGREIRKPGFLGQWLRMLDRPAMEKRARDKLT
ELGLMTIQNIGQAVETLSGGQRQGVAVARAAAFGSRVVIMDEPTAALGVKESRRVLELILDVKKRGLPIVLISHNMPHVF
EVADRVHIHRLGRRLAVIDPKQYTMSDAVAFMTGAKAPPEAALAA

Sequences:

>Translated_285_residues
MESAAHRCVDHRRRGGRPMDQKGFGMTQDPILTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGA
VVPDEGEIQLEGKTVAFKSPMEAREAGIETVYQNLALSPALSIADNMFLGREIRKPGFLGQWLRMLDRPAMEKRARDKLT
ELGLMTIQNIGQAVETLSGGQRQGVAVARAAAFGSRVVIMDEPTAALGVKESRRVLELILDVKKRGLPIVLISHNMPHVF
EVADRVHIHRLGRRLAVIDPKQYTMSDAVAFMTGAKAPPEAALAA
>Mature_285_residues
MESAAHRCVDHRRRGGRPMDQKGFGMTQDPILTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGA
VVPDEGEIQLEGKTVAFKSPMEAREAGIETVYQNLALSPALSIADNMFLGREIRKPGFLGQWLRMLDRPAMEKRARDKLT
ELGLMTIQNIGQAVETLSGGQRQGVAVARAAAFGSRVVIMDEPTAALGVKESRRVLELILDVKKRGLPIVLISHNMPHVF
EVADRVHIHRLGRRLAVIDPKQYTMSDAVAFMTGAKAPPEAALAA

Specific function: Part of the ABC transporter complex RbsABCD involved in ribose import. Responsible for energy coupling to the transport system [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI21536376, Length=227, Percent_Identity=28.1938325991189, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI27881501, Length=212, Percent_Identity=28.3018867924528, Blast_Score=85, Evalue=9e-17,
Organism=Homo sapiens, GI30795238, Length=212, Percent_Identity=28.3018867924528, Blast_Score=85, Evalue=9e-17,
Organism=Homo sapiens, GI105990541, Length=263, Percent_Identity=25.8555133079848, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI153792144, Length=215, Percent_Identity=28.3720930232558, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI150417984, Length=235, Percent_Identity=29.3617021276596, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI47078218, Length=238, Percent_Identity=26.4705882352941, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI45446740, Length=236, Percent_Identity=26.271186440678, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI27477115, Length=200, Percent_Identity=29.5, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI157502203, Length=207, Percent_Identity=27.536231884058, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI157502201, Length=242, Percent_Identity=26.8595041322314, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI31657092, Length=226, Percent_Identity=26.9911504424779, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI42741659, Length=196, Percent_Identity=28.0612244897959, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI116734710, Length=204, Percent_Identity=27.9411764705882, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI27436953, Length=224, Percent_Identity=27.6785714285714, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI21536378, Length=194, Percent_Identity=26.8041237113402, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI190343023, Length=193, Percent_Identity=32.6424870466321, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI27262624, Length=208, Percent_Identity=26.9230769230769, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI27262626, Length=208, Percent_Identity=26.9230769230769, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI4505771, Length=203, Percent_Identity=28.0788177339901, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI9961252, Length=203, Percent_Identity=28.0788177339901, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI9961250, Length=203, Percent_Identity=28.0788177339901, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI11967971, Length=208, Percent_Identity=26.9230769230769, Blast_Score=65, Evalue=8e-11,
Organism=Escherichia coli, GI48995001, Length=252, Percent_Identity=36.9047619047619, Blast_Score=165, Evalue=3e-42,
Organism=Escherichia coli, GI1790190, Length=248, Percent_Identity=35.8870967741936, Blast_Score=150, Evalue=7e-38,
Organism=Escherichia coli, GI1788472, Length=244, Percent_Identity=36.4754098360656, Blast_Score=144, Evalue=4e-36,
Organism=Escherichia coli, GI1788210, Length=240, Percent_Identity=31.6666666666667, Blast_Score=137, Evalue=6e-34,
Organism=Escherichia coli, GI1789991, Length=247, Percent_Identity=31.1740890688259, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1787792, Length=223, Percent_Identity=32.7354260089686, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI1790525, Length=245, Percent_Identity=30.6122448979592, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1788897, Length=241, Percent_Identity=34.4398340248963, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI87081709, Length=249, Percent_Identity=28.1124497991968, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1789962, Length=239, Percent_Identity=32.6359832635983, Blast_Score=103, Evalue=9e-24,
Organism=Escherichia coli, GI1789864, Length=247, Percent_Identity=27.1255060728745, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI145693107, Length=264, Percent_Identity=30.3030303030303, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI87081791, Length=235, Percent_Identity=29.7872340425532, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1787712, Length=235, Percent_Identity=31.063829787234, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI1790544, Length=227, Percent_Identity=28.6343612334802, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1787500, Length=213, Percent_Identity=30.0469483568075, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI1790162, Length=229, Percent_Identity=30.1310043668122, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1788225, Length=231, Percent_Identity=30.3030303030303, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1786398, Length=208, Percent_Identity=31.7307692307692, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1787029, Length=219, Percent_Identity=29.2237442922374, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1787370, Length=226, Percent_Identity=28.7610619469027, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1789032, Length=258, Percent_Identity=28.2945736434109, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI48994997, Length=237, Percent_Identity=27.8481012658228, Blast_Score=87, Evalue=9e-19,
Organism=Escherichia coli, GI1786803, Length=239, Percent_Identity=26.7782426778243, Blast_Score=87, Evalue=9e-19,
Organism=Escherichia coli, GI1786872, Length=220, Percent_Identity=32.2727272727273, Blast_Score=87, Evalue=9e-19,
Organism=Escherichia coli, GI1790534, Length=224, Percent_Identity=31.25, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1788761, Length=241, Percent_Identity=29.045643153527, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1789672, Length=219, Percent_Identity=26.027397260274, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1787758, Length=237, Percent_Identity=26.5822784810127, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI87081834, Length=219, Percent_Identity=26.9406392694064, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1786563, Length=207, Percent_Identity=30.9178743961353, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1787164, Length=226, Percent_Identity=26.9911504424779, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1789593, Length=243, Percent_Identity=27.9835390946502, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI1790467, Length=248, Percent_Identity=25.8064516129032, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787089, Length=244, Percent_Identity=29.0983606557377, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI87082267, Length=211, Percent_Identity=28.9099526066351, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI48994943, Length=233, Percent_Identity=27.4678111587983, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1788165, Length=208, Percent_Identity=30.2884615384615, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1787105, Length=224, Percent_Identity=27.6785714285714, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI87082268, Length=209, Percent_Identity=25.8373205741627, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788450, Length=216, Percent_Identity=28.7037037037037, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1786345, Length=250, Percent_Identity=25.6, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI48994883, Length=228, Percent_Identity=26.7543859649123, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1790739, Length=235, Percent_Identity=24.6808510638298, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1786698, Length=225, Percent_Identity=26.6666666666667, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1787759, Length=254, Percent_Identity=29.5275590551181, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788506, Length=224, Percent_Identity=27.2321428571429, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87081782, Length=237, Percent_Identity=24.8945147679325, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI2367384, Length=225, Percent_Identity=30.2222222222222, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787547, Length=208, Percent_Identity=25.4807692307692, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787143, Length=206, Percent_Identity=31.0679611650485, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1786319, Length=206, Percent_Identity=27.1844660194175, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1787112, Length=192, Percent_Identity=29.1666666666667, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1789963, Length=219, Percent_Identity=25.5707762557078, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1786253, Length=191, Percent_Identity=28.2722513089005, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788644, Length=227, Percent_Identity=27.7533039647577, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1786981, Length=199, Percent_Identity=29.1457286432161, Blast_Score=61, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI115534520, Length=213, Percent_Identity=31.4553990610329, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI71992290, Length=213, Percent_Identity=28.169014084507, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI115533608, Length=245, Percent_Identity=24.8979591836735, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17565586, Length=214, Percent_Identity=25.2336448598131, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17541710, Length=195, Percent_Identity=29.2307692307692, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24666092, Length=214, Percent_Identity=28.5046728971963, Blast_Score=86, Evalue=4e-17,
Organism=Drosophila melanogaster, GI28571209, Length=280, Percent_Identity=25.3571428571429, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI28574259, Length=236, Percent_Identity=29.6610169491525, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24659289, Length=211, Percent_Identity=26.5402843601896, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI221500365, Length=223, Percent_Identity=28.2511210762332, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI28574533, Length=198, Percent_Identity=30.3030303030303, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI116007184, Length=223, Percent_Identity=28.2511210762332, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI221512771, Length=217, Percent_Identity=27.6497695852535, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI17136592, Length=236, Percent_Identity=29.2372881355932, Blast_Score=72, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24643674, Length=218, Percent_Identity=26.605504587156, Blast_Score=71, Evalue=9e-13,
Organism=Drosophila melanogaster, GI28574150, Length=233, Percent_Identity=26.6094420600858, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI116007328, Length=233, Percent_Identity=26.6094420600858, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI17136662, Length=199, Percent_Identity=26.6331658291457, Blast_Score=65, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR015861
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: =3.6.3.17 [H]

Molecular weight: Translated: 30941; Mature: 30941

Theoretical pI: Translated: 10.05; Mature: 10.05

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESAAHRCVDHRRRGGRPMDQKGFGMTQDPILTARGLVKRYGRVTALDNADFDLYPGEIL
CCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCEEE
AVIGDNGAGKSSLIKAISGAVVPDEGEIQLEGKTVAFKSPMEAREAGIETVYQNLALSPA
EEECCCCCCHHHHHHHHHCCCCCCCCCEEECCCEEEECCCHHHHHHHHHHHHHHHHCCHH
LSIADNMFLGREIRKPGFLGQWLRMLDRPAMEKRARDKLTELGLMTIQNIGQAVETLSGG
HHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
QRQGVAVARAAAFGSRVVIMDEPTAALGVKESRRVLELILDVKKRGLPIVLISHNMPHVF
CCCCHHHHHHHHHCCEEEEEECCCHHHCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHH
EVADRVHIHRLGRRLAVIDPKQYTMSDAVAFMTGAKAPPEAALAA
HHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHCCCCCCHHHCCC
>Mature Secondary Structure
MESAAHRCVDHRRRGGRPMDQKGFGMTQDPILTARGLVKRYGRVTALDNADFDLYPGEIL
CCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCEEE
AVIGDNGAGKSSLIKAISGAVVPDEGEIQLEGKTVAFKSPMEAREAGIETVYQNLALSPA
EEECCCCCCHHHHHHHHHCCCCCCCCCEEECCCEEEECCCHHHHHHHHHHHHHHHHCCHH
LSIADNMFLGREIRKPGFLGQWLRMLDRPAMEKRARDKLTELGLMTIQNIGQAVETLSGG
HHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
QRQGVAVARAAAFGSRVVIMDEPTAALGVKESRRVLELILDVKKRGLPIVLISHNMPHVF
CCCCHHHHHHHHHCCEEEEEECCCHHHCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHH
EVADRVHIHRLGRRLAVIDPKQYTMSDAVAFMTGAKAPPEAALAA
HHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA