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The map label for this gene is rbsC [H]

Identifier: 13476300

GI number: 13476300

Start: 6268634

End: 6269695

Strand: Direct

Name: rbsC [H]

Synonym: mlr7584

Alternate gene names: 13476300

Gene position: 6268634-6269695 (Clockwise)

Preceding gene: 13476299

Following gene: 13476301

Centisome position: 89.09

GC content: 62.52

Gene sequence:

>1062_bases
ATGACTCAAGCTCAGGAATTCGAGAAGGTTCTCTCGGCCAGCGACACCAGCGTTGCCGCGTTCGACGAACACAAATCGGC
AGTCAGGCGCGTGCAGCACTTCCTGCATTCGACGCCGGCGGCAGTGCCGCTCATCGTGCTGGTCCTGTCGATCATCATCT
TCGGCATCACCATTGGCGGGCGCTTCTTCTCGTCCTACACGCTGACGCTGATCCTGCAACAGATAGCCATCGTCGGTATT
CTGGGTGCTGCGCAGACACTGGTCATCCTGACCGCCGGCATCGACCTGTCGATCGGCGTCATCATGGTGATCTCAGCCGT
GATCATGGGCAATTGCGCCGTCAGCTACGGCTTGCCGAGCGTGGTGGCCGTGGCGCTCGGGCTTGCCACGGGTGCCGCCT
GCGGGCTGCTCAATGGGTTGCTGGTCGCCTACATGAAGCTGCCGCCTTTCATCGTGACGCTGGGCACGTGGAACATCGTC
ATGGCCACGAACTTTATCTATTCGGCCAATGAAACGATCCGTGACACCGACGTCGACACCCAGGCGCCGCTGCTGCATCT
GTTCGCCCTGAGCTTCAAGGTGGGTACCGCGGTGCTGACGCTCGGTGTCATCGCCATGGTCGCGCTGGTGTTGCTCCTCT
GGTACGTCCTCAACCACACCGCCTGGGGCCGACATGTCTACGCCGTTGGCGACGACCAGGAGGCGGCCAAGCTGTCGGGC
ATCCAGACCAAGAAGGTGCTGGTGACGGTCTACACCCTTGCCGGGCTGATCGCCGCCTTCGCCGCCTGGGTCTCCATCGG
CCGCAACGGTTCGATCTCACCGTCGGCGGCCGTCACCGACTACAATCTGCAAGCGATCACCGCGACGGTGATCGGTGGTA
TTTCCCTCTTCGGCGGGCGCGGCTCGATCCTGGGCACGCTGTTCGGCGCGATGATCGTCGGCGTCGTCTCCATGGGCCTC
AACATGCTGGGCGCCGACCCGCAGTGGAAAGTGCTGCTCACCGGTGTGTTGATCATCGGCGCCGTGGCGGTCGACCAATG
GATCAGAAAGGTTTCGGCATGA

Upstream 100 bases:

>100_bases
GGGTGGACGATGGGTCGCGTGACCGCGAACAATCCCGGCGACAGACCGGAAAGGCGTGGACGGGCGTCGGCGCTAGGCTG
ACACCTCACGGGGAGGAAAC

Downstream 100 bases:

>100_bases
CCCAGGACCCCATTCTCACCGCGCGTGGCCTGGTCAAGCGCTATGGCCGCGTCACTGCCCTCGACAATGCCGACTTCGAC
CTCTATCCCGGCGAAATCCT

Product: sugar ABC transporter, permease protein

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 353; Mature: 352

Protein sequence:

>353_residues
MTQAQEFEKVLSASDTSVAAFDEHKSAVRRVQHFLHSTPAAVPLIVLVLSIIIFGITIGGRFFSSYTLTLILQQIAIVGI
LGAAQTLVILTAGIDLSIGVIMVISAVIMGNCAVSYGLPSVVAVALGLATGAACGLLNGLLVAYMKLPPFIVTLGTWNIV
MATNFIYSANETIRDTDVDTQAPLLHLFALSFKVGTAVLTLGVIAMVALVLLLWYVLNHTAWGRHVYAVGDDQEAAKLSG
IQTKKVLVTVYTLAGLIAAFAAWVSIGRNGSISPSAAVTDYNLQAITATVIGGISLFGGRGSILGTLFGAMIVGVVSMGL
NMLGADPQWKVLLTGVLIIGAVAVDQWIRKVSA

Sequences:

>Translated_353_residues
MTQAQEFEKVLSASDTSVAAFDEHKSAVRRVQHFLHSTPAAVPLIVLVLSIIIFGITIGGRFFSSYTLTLILQQIAIVGI
LGAAQTLVILTAGIDLSIGVIMVISAVIMGNCAVSYGLPSVVAVALGLATGAACGLLNGLLVAYMKLPPFIVTLGTWNIV
MATNFIYSANETIRDTDVDTQAPLLHLFALSFKVGTAVLTLGVIAMVALVLLLWYVLNHTAWGRHVYAVGDDQEAAKLSG
IQTKKVLVTVYTLAGLIAAFAAWVSIGRNGSISPSAAVTDYNLQAITATVIGGISLFGGRGSILGTLFGAMIVGVVSMGL
NMLGADPQWKVLLTGVLIIGAVAVDQWIRKVSA
>Mature_352_residues
TQAQEFEKVLSASDTSVAAFDEHKSAVRRVQHFLHSTPAAVPLIVLVLSIIIFGITIGGRFFSSYTLTLILQQIAIVGIL
GAAQTLVILTAGIDLSIGVIMVISAVIMGNCAVSYGLPSVVAVALGLATGAACGLLNGLLVAYMKLPPFIVTLGTWNIVM
ATNFIYSANETIRDTDVDTQAPLLHLFALSFKVGTAVLTLGVIAMVALVLLLWYVLNHTAWGRHVYAVGDDQEAAKLSGI
QTKKVLVTVYTLAGLIAAFAAWVSIGRNGSISPSAAVTDYNLQAITATVIGGISLFGGRGSILGTLFGAMIVGVVSMGLN
MLGADPQWKVLLTGVLIIGAVAVDQWIRKVSA

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=292, Percent_Identity=37.6712328767123, Blast_Score=150, Evalue=2e-37,
Organism=Escherichia coli, GI1790524, Length=307, Percent_Identity=32.2475570032573, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI1788896, Length=301, Percent_Identity=31.8936877076412, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI87082395, Length=277, Percent_Identity=31.0469314079422, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1788471, Length=278, Percent_Identity=33.8129496402878, Blast_Score=101, Evalue=7e-23,
Organism=Escherichia coli, GI145693214, Length=277, Percent_Identity=35.0180505415162, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787793, Length=294, Percent_Identity=31.2925170068027, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1787794, Length=296, Percent_Identity=32.0945945945946, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI145693152, Length=213, Percent_Identity=30.0469483568075, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1789992, Length=138, Percent_Identity=36.9565217391304, Blast_Score=86, Evalue=5e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 36909; Mature: 36778

Theoretical pI: Translated: 8.22; Mature: 8.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQAQEFEKVLSASDTSVAAFDEHKSAVRRVQHFLHSTPAAVPLIVLVLSIIIFGITIGG
CCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCH
RFFSSYTLTLILQQIAIVGILGAAQTLVILTAGIDLSIGVIMVISAVIMGNCAVSYGLPS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHCHHHHCCCHH
VVAVALGLATGAACGLLNGLLVAYMKLPPFIVTLGTWNIVMATNFIYSANETIRDTDVDT
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEHHHHHEEECCCCCCCCCCCC
QAPLLHLFALSFKVGTAVLTLGVIAMVALVLLLWYVLNHTAWGRHVYAVGDDQEAAKLSG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHCC
IQTKKVLVTVYTLAGLIAAFAAWVSIGRNGSISPSAAVTDYNLQAITATVIGGISLFGGR
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCC
GSILGTLFGAMIVGVVSMGLNMLGADPQWKVLLTGVLIIGAVAVDQWIRKVSA
CHHHHHHHHHHHHHHHHHCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TQAQEFEKVLSASDTSVAAFDEHKSAVRRVQHFLHSTPAAVPLIVLVLSIIIFGITIGG
CCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCH
RFFSSYTLTLILQQIAIVGILGAAQTLVILTAGIDLSIGVIMVISAVIMGNCAVSYGLPS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHCHHHHCCCHH
VVAVALGLATGAACGLLNGLLVAYMKLPPFIVTLGTWNIVMATNFIYSANETIRDTDVDT
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEHHHHHEEECCCCCCCCCCCC
QAPLLHLFALSFKVGTAVLTLGVIAMVALVLLLWYVLNHTAWGRHVYAVGDDQEAAKLSG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHCC
IQTKKVLVTVYTLAGLIAAFAAWVSIGRNGSISPSAAVTDYNLQAITATVIGGISLFGGR
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCC
GSILGTLFGAMIVGVVSMGLNMLGADPQWKVLLTGVLIIGAVAVDQWIRKVSA
CHHHHHHHHHHHHHHHHHCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]