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The map label for this gene is ddpB [H]

Identifier: 13475568

GI number: 13475568

Start: 5466909

End: 5467925

Strand: Direct

Name: ddpB [H]

Synonym: mlr6671

Alternate gene names: 13475568

Gene position: 5466909-5467925 (Clockwise)

Preceding gene: 13475567

Following gene: 13475569

Centisome position: 77.7

GC content: 61.26

Gene sequence:

>1017_bases
ATGACGATCATGCGCATTATCATTCCCCGCTTCGTGATGCTGTTCTTCGTCGTCTTCGGCGTCGCGGTCATCACCTTCAT
CATTTCCCATCTGATCCCCGGCGATCCCGCCCGGATGATCGCCGGTGACAGGGCAAGCGTCGAAACGCTGATGAGTGTGC
GGCGCGATCTCGGGCTCGATCGGCCAGTGTGGGATCAATTCGCTATCTACGTCAGCAACCTGCTGCATGGCGACCTCGGT
ACCTCGCTGCGGACGCGCCGCTCGGTTGCCGGCGACATTGCCACCTTCCTGCCGGCAACGATGGAGCTCGGCGCCATCTC
GCTGATCCTGTCGATCGTGATCGGCATTCCACTCGGCGTAGCGTCCGCCATCTACAAGGACGGACCAATCGATCAGGTGG
CTCGCACCATCTCGGTCTGCGGTATCTCGATGCCGGTGTTCTGGTTCGCACTGGTGCTGGTGCTGCTGTTCTACGCCAAG
CTGCACATTCTGCCCGGGAGCGGTCGCATCGACATGGGCATTGCGTTGCCAACGCGCATCACCGGCTTCTTCCTGATCGA
TTCCCTGCTCGAAGGCCGCATGGACGCTTTCTGGAGCAGCGTGCGGCATCTCATCTTGCCTTCCGCCGTGCTCGCCTTTG
CCAATCTCGGCGTCATCACGCGCCAGATCCGGGCTTCGATGCTGGACGTCCTTCAGGAGGACTACATCCGAACGGCTCGC
GCCAGTGGCCTGCGACGCCGGGTCATCATCTTCAACCATGCCTTGCGCAACGCATTGATCCCGTCGATCACGCTGCTTGG
CCTGGCGCTCGGCGACCTTCTCTACGGCGCGGTGCTGACCGAGACCGTGTTCGCATGGCCGGGCATGGGCACCTATGTCG
TGACCTCGATCCAGACTCTCGATTTCCCGGCGATCATGGGGTTCACCGTGGTTGCATCGATCGGCTACGTCCTCATCAAC
CTGATCGTCGACATCGCCTACATGTTCGCCGATCCGCAGATCAGGGAGATCGGGTGA

Upstream 100 bases:

>100_bases
GCGCCGAACAATGTCTGACGGTCGGGGAGGCGGGACGCCTTTCCGGCCGCCCTGTTCCGTAGGCAAAAGAAGCCCGCAGC
GCCGCGAGGACCGACCTCAG

Downstream 100 bases:

>100_bases
TGAGCGTCGCATCTTCGACAACACAAAGTGTCGCCGCCGCCGCTGGCTGGAAGTCGCGATTACATTTTTTCTGGTATCTG
ACCCGCCGCAGCCCACTGAC

Product: peptide ABC transporter, permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 337

Protein sequence:

>338_residues
MTIMRIIIPRFVMLFFVVFGVAVITFIISHLIPGDPARMIAGDRASVETLMSVRRDLGLDRPVWDQFAIYVSNLLHGDLG
TSLRTRRSVAGDIATFLPATMELGAISLILSIVIGIPLGVASAIYKDGPIDQVARTISVCGISMPVFWFALVLVLLFYAK
LHILPGSGRIDMGIALPTRITGFFLIDSLLEGRMDAFWSSVRHLILPSAVLAFANLGVITRQIRASMLDVLQEDYIRTAR
ASGLRRRVIIFNHALRNALIPSITLLGLALGDLLYGAVLTETVFAWPGMGTYVVTSIQTLDFPAIMGFTVVASIGYVLIN
LIVDIAYMFADPQIREIG

Sequences:

>Translated_338_residues
MTIMRIIIPRFVMLFFVVFGVAVITFIISHLIPGDPARMIAGDRASVETLMSVRRDLGLDRPVWDQFAIYVSNLLHGDLG
TSLRTRRSVAGDIATFLPATMELGAISLILSIVIGIPLGVASAIYKDGPIDQVARTISVCGISMPVFWFALVLVLLFYAK
LHILPGSGRIDMGIALPTRITGFFLIDSLLEGRMDAFWSSVRHLILPSAVLAFANLGVITRQIRASMLDVLQEDYIRTAR
ASGLRRRVIIFNHALRNALIPSITLLGLALGDLLYGAVLTETVFAWPGMGTYVVTSIQTLDFPAIMGFTVVASIGYVLIN
LIVDIAYMFADPQIREIG
>Mature_337_residues
TIMRIIIPRFVMLFFVVFGVAVITFIISHLIPGDPARMIAGDRASVETLMSVRRDLGLDRPVWDQFAIYVSNLLHGDLGT
SLRTRRSVAGDIATFLPATMELGAISLILSIVIGIPLGVASAIYKDGPIDQVARTISVCGISMPVFWFALVLVLLFYAKL
HILPGSGRIDMGIALPTRITGFFLIDSLLEGRMDAFWSSVRHLILPSAVLAFANLGVITRQIRASMLDVLQEDYIRTARA
SGLRRRVIIFNHALRNALIPSITLLGLALGDLLYGAVLTETVFAWPGMGTYVVTSIQTLDFPAIMGFTVVASIGYVLINL
IVDIAYMFADPQIREIG

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787761, Length=338, Percent_Identity=57.9881656804734, Blast_Score=356, Evalue=1e-99,
Organism=Escherichia coli, GI1789965, Length=334, Percent_Identity=40.4191616766467, Blast_Score=265, Evalue=4e-72,
Organism=Escherichia coli, GI1787053, Length=333, Percent_Identity=36.9369369369369, Blast_Score=228, Evalue=3e-61,
Organism=Escherichia coli, GI1789888, Length=337, Percent_Identity=35.0148367952522, Blast_Score=200, Evalue=9e-53,
Organism=Escherichia coli, GI1787550, Length=273, Percent_Identity=34.7985347985348, Blast_Score=165, Evalue=4e-42,
Organism=Escherichia coli, GI1787497, Length=337, Percent_Identity=29.080118694362, Blast_Score=157, Evalue=1e-39,
Organism=Escherichia coli, GI1788504, Length=290, Percent_Identity=25.8620689655172, Blast_Score=106, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36980; Mature: 36848

Theoretical pI: Translated: 8.96; Mature: 8.96

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIMRIIIPRFVMLFFVVFGVAVITFIISHLIPGDPARMIAGDRASVETLMSVRRDLGLD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHCCCC
RPVWDQFAIYVSNLLHGDLGTSLRTRRSVAGDIATFLPATMELGAISLILSIVIGIPLGV
CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASAIYKDGPIDQVARTISVCGISMPVFWFALVLVLLFYAKLHILPGSGRIDMGIALPTRI
HHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHH
TGFFLIDSLLEGRMDAFWSSVRHLILPSAVLAFANLGVITRQIRASMLDVLQEDYIRTAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASGLRRRVIIFNHALRNALIPSITLLGLALGDLLYGAVLTETVFAWPGMGTYVVTSIQTL
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
DFPAIMGFTVVASIGYVLINLIVDIAYMFADPQIREIG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCC
>Mature Secondary Structure 
TIMRIIIPRFVMLFFVVFGVAVITFIISHLIPGDPARMIAGDRASVETLMSVRRDLGLD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHCCCC
RPVWDQFAIYVSNLLHGDLGTSLRTRRSVAGDIATFLPATMELGAISLILSIVIGIPLGV
CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASAIYKDGPIDQVARTISVCGISMPVFWFALVLVLLFYAKLHILPGSGRIDMGIALPTRI
HHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHH
TGFFLIDSLLEGRMDAFWSSVRHLILPSAVLAFANLGVITRQIRASMLDVLQEDYIRTAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASGLRRRVIIFNHALRNALIPSITLLGLALGDLLYGAVLTETVFAWPGMGTYVVTSIQTL
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
DFPAIMGFTVVASIGYVLINLIVDIAYMFADPQIREIG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]