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The map label for this gene is ddpA [H]

Identifier: 13475567

GI number: 13475567

Start: 5465105

End: 5466646

Strand: Direct

Name: ddpA [H]

Synonym: mlr6670

Alternate gene names: 13475567

Gene position: 5465105-5466646 (Clockwise)

Preceding gene: 13475566

Following gene: 13475568

Centisome position: 77.67

GC content: 60.51

Gene sequence:

>1542_bases
ATGGTTTTCGCGCACTGGAAGAAGCTGGGCCTAGCCCTTTTAGTTACATCATCGCTTACGCAAACAGCATGGGCCGCTTC
GGACGTGCTGGTTCTCAGCCGGGCGGAGGACGCGCCGACCGCGGACCCTGGCGTCGAGATCAGCAACAGCGGCTATACCT
TCATCTATGCCGCCTATGAGCATCTGGTTGCCTACAAGGGCGCGACCACCGAGGTCGTTCCGGAGCTCGCGGAAAGCTGG
TCCGTCGACGACACCAACACGGTCTGGACTTTCAAGCTGGCCCAGGGCCACAAATTCGATGACGGCACACCTGTCGACGC
GGCAGCGGTCAAGTTCAGCTTCGACCGCGCAATGAAGCTCAAGGCCGGCCCTTCCGATGCTTTTCCCGTGCTGAAGGAAG
TTCAGGTCGTCGATCCGGGCACCGTCAAGTTCATCCTGTCGTCGCAGTTCGCACCGTTCCTCTCGACTATGGCCGTCTCC
GGCGCGGCCATCATCAATCCGAAAGTGATGGAGCATGAAAAAGATGGCGACATGGCCAAGGCATGGCTGGCGGAGCACAC
GGCCGGCAGTGGCGCCTACAAGATCACCAGCTGGGAACGCAACCAGAGCGTCGTCCTCGATCGCAATGAGCATTACGCCG
GGTCAACTCCGGCCTTGAAGCAGATCGTGGTGCGCACCGTCGGTGAAATCTCGGCGCGCCGCCTGCAGCTCGTCAACGGC
GATGCCGACATCATCGAACAGGTCCCGGTCGACCAGGCGGCCGCGCTCAAAGGCGATCCCAACATCGTTGTCGAGAGCAA
TCCAAGCCTCTACGTCAACTACGTCTATATGAACAACAAACGCCCACCGCTCGACGATGCGCGCGTGCGCCAGGCGATCT
CCTATGCCGTGGACTACAAGGGCATCGTCGACGGCATCATGCAGGGCCAGGCCGAGCAGATGCGCGGCGCTGTTCCGGAC
GGCATGTGGGCGCACGACCCCAACGGTTTCCAGTACAGCTACGACGTCGAGAAAGCCAAGGCACTGTTGAAGGAAGCCGG
CAAATCCGACATCCATCTGACCTACACATTCTCGCAGGCAGACACGGCCTGGGAACCGGTCGGCCTCGCCTTGCAGGCAA
ATCTCGCCGACATTGGCATCAAGCTCGATCTGCAGGCTGTTGCCGACACCACAAAACGCGAAATGGCGGCAAGCGGCAAT
TACGACCTGGCGCCTGGCGCATGGACGCCCGATTTCGCCGACCCTTACATGTTCATGAACTACTGGTTCGATCCGGACCG
GATGGGCGGCCCGGGTAACCGCGCCTTCTACAACAATCCCAAGGTTGCCGGCCTTGTTCGCGAGGCCGCTAGCATCATCG
ACCAGCCGAAGCGCGAGCAGCTCTACCTCGAGGCACAGAAGCTGTCGACGCAAGACGCACCCTATCTCTACCTGATGCAG
AAGAACGACATCTTCGCGCGGCGGGCCGTGGTCAAGGGCTACGTCTACAACCCGATGCTCATCCAGGTCTACAACTTCGC
CACCATGTCGAAGTCGGAATGA

Upstream 100 bases:

>100_bases
AATAAGTTGCGCTTAGGAAAATCGCTGCCTAATCTGATCCTGCGGACAAATTGCCGGAACAGGCGTCGTTCGAGTCCGCC
GAACCTCAGAGGGTAGATAG

Downstream 100 bases:

>100_bases
GCGCGCGCGACGGAGCGCCGATGGCGCTCCCGTTCGTCGCCCATATGGACCCTGACCTTTTCGGCATCCCCGCCTTGCAG
AGTGCTGCCACACCAGATGC

Product: oligopeptide ABC transporter, periplasmic oligopeptide-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 513; Mature: 513

Protein sequence:

>513_residues
MVFAHWKKLGLALLVTSSLTQTAWAASDVLVLSRAEDAPTADPGVEISNSGYTFIYAAYEHLVAYKGATTEVVPELAESW
SVDDTNTVWTFKLAQGHKFDDGTPVDAAAVKFSFDRAMKLKAGPSDAFPVLKEVQVVDPGTVKFILSSQFAPFLSTMAVS
GAAIINPKVMEHEKDGDMAKAWLAEHTAGSGAYKITSWERNQSVVLDRNEHYAGSTPALKQIVVRTVGEISARRLQLVNG
DADIIEQVPVDQAAALKGDPNIVVESNPSLYVNYVYMNNKRPPLDDARVRQAISYAVDYKGIVDGIMQGQAEQMRGAVPD
GMWAHDPNGFQYSYDVEKAKALLKEAGKSDIHLTYTFSQADTAWEPVGLALQANLADIGIKLDLQAVADTTKREMAASGN
YDLAPGAWTPDFADPYMFMNYWFDPDRMGGPGNRAFYNNPKVAGLVREAASIIDQPKREQLYLEAQKLSTQDAPYLYLMQ
KNDIFARRAVVKGYVYNPMLIQVYNFATMSKSE

Sequences:

>Translated_513_residues
MVFAHWKKLGLALLVTSSLTQTAWAASDVLVLSRAEDAPTADPGVEISNSGYTFIYAAYEHLVAYKGATTEVVPELAESW
SVDDTNTVWTFKLAQGHKFDDGTPVDAAAVKFSFDRAMKLKAGPSDAFPVLKEVQVVDPGTVKFILSSQFAPFLSTMAVS
GAAIINPKVMEHEKDGDMAKAWLAEHTAGSGAYKITSWERNQSVVLDRNEHYAGSTPALKQIVVRTVGEISARRLQLVNG
DADIIEQVPVDQAAALKGDPNIVVESNPSLYVNYVYMNNKRPPLDDARVRQAISYAVDYKGIVDGIMQGQAEQMRGAVPD
GMWAHDPNGFQYSYDVEKAKALLKEAGKSDIHLTYTFSQADTAWEPVGLALQANLADIGIKLDLQAVADTTKREMAASGN
YDLAPGAWTPDFADPYMFMNYWFDPDRMGGPGNRAFYNNPKVAGLVREAASIIDQPKREQLYLEAQKLSTQDAPYLYLMQ
KNDIFARRAVVKGYVYNPMLIQVYNFATMSKSE
>Mature_513_residues
MVFAHWKKLGLALLVTSSLTQTAWAASDVLVLSRAEDAPTADPGVEISNSGYTFIYAAYEHLVAYKGATTEVVPELAESW
SVDDTNTVWTFKLAQGHKFDDGTPVDAAAVKFSFDRAMKLKAGPSDAFPVLKEVQVVDPGTVKFILSSQFAPFLSTMAVS
GAAIINPKVMEHEKDGDMAKAWLAEHTAGSGAYKITSWERNQSVVLDRNEHYAGSTPALKQIVVRTVGEISARRLQLVNG
DADIIEQVPVDQAAALKGDPNIVVESNPSLYVNYVYMNNKRPPLDDARVRQAISYAVDYKGIVDGIMQGQAEQMRGAVPD
GMWAHDPNGFQYSYDVEKAKALLKEAGKSDIHLTYTFSQADTAWEPVGLALQANLADIGIKLDLQAVADTTKREMAASGN
YDLAPGAWTPDFADPYMFMNYWFDPDRMGGPGNRAFYNNPKVAGLVREAASIIDQPKREQLYLEAQKLSTQDAPYLYLMQ
KNDIFARRAVVKGYVYNPMLIQVYNFATMSKSE

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787762, Length=506, Percent_Identity=46.2450592885375, Blast_Score=465, Evalue=1e-132,
Organism=Escherichia coli, GI1789966, Length=523, Percent_Identity=27.9158699808795, Blast_Score=178, Evalue=1e-45,
Organism=Escherichia coli, GI1787052, Length=440, Percent_Identity=28.8636363636364, Blast_Score=151, Evalue=8e-38,
Organism=Escherichia coli, GI1787551, Length=517, Percent_Identity=25.3384912959381, Blast_Score=149, Evalue=6e-37,
Organism=Escherichia coli, GI1789887, Length=443, Percent_Identity=23.2505643340858, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1787495, Length=435, Percent_Identity=25.9770114942529, Blast_Score=108, Evalue=9e-25,
Organism=Escherichia coli, GI87081878, Length=530, Percent_Identity=24.7169811320755, Blast_Score=104, Evalue=1e-23,
Organism=Escherichia coli, GI1789397, Length=513, Percent_Identity=23.1968810916179, Blast_Score=88, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 56431; Mature: 56431

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVFAHWKKLGLALLVTSSLTQTAWAASDVLVLSRAEDAPTADPGVEISNSGYTFIYAAYE
CCCCCHHHHCEEEEEHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEECCCCCEEEEEEHH
HLVAYKGATTEVVPELAESWSVDDTNTVWTFKLAQGHKFDDGTPVDAAAVKFSFDRAMKL
HHHHCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCHHEEEEECCCEEEE
KAGPSDAFPVLKEVQVVDPGTVKFILSSQFAPFLSTMAVSGAAIINPKVMEHEKDGDMAK
CCCCCCCCHHHHHEEEECCCEEEEEECCCCHHHHHHHHHCCCEEECCHHHCCCCCCHHHH
AWLAEHTAGSGAYKITSWERNQSVVLDRNEHYAGSTPALKQIVVRTVGEISARRLQLVNG
HHHHHHCCCCCEEEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHEEEEECC
DADIIEQVPVDQAAALKGDPNIVVESNPSLYVNYVYMNNKRPPLDDARVRQAISYAVDYK
CHHHHHHCCCCHHHHCCCCCCEEEECCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHCHH
GIVDGIMQGQAEQMRGAVPDGMWAHDPNGFQYSYDVEKAKALLKEAGKSDIHLTYTFSQA
HHHHHHHCCCHHHHCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHCCCCCEEEEEEECCC
DTAWEPVGLALQANLADIGIKLDLQAVADTTKREMAASGNYDLAPGAWTPDFADPYMFMN
CCCCCCCCEEEECCHHHEEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEE
YWFDPDRMGGPGNRAFYNNPKVAGLVREAASIIDQPKREQLYLEAQKLSTQDAPYLYLMQ
EEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHEEEEHHHCCCCCCCEEEEEE
KNDIFARRAVVKGYVYNPMLIQVYNFATMSKSE
CCCHHHHHHHHHCEECCCEEEEEEEHHHCCCCC
>Mature Secondary Structure
MVFAHWKKLGLALLVTSSLTQTAWAASDVLVLSRAEDAPTADPGVEISNSGYTFIYAAYE
CCCCCHHHHCEEEEEHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEECCCCCEEEEEEHH
HLVAYKGATTEVVPELAESWSVDDTNTVWTFKLAQGHKFDDGTPVDAAAVKFSFDRAMKL
HHHHCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCHHEEEEECCCEEEE
KAGPSDAFPVLKEVQVVDPGTVKFILSSQFAPFLSTMAVSGAAIINPKVMEHEKDGDMAK
CCCCCCCCHHHHHEEEECCCEEEEEECCCCHHHHHHHHHCCCEEECCHHHCCCCCCHHHH
AWLAEHTAGSGAYKITSWERNQSVVLDRNEHYAGSTPALKQIVVRTVGEISARRLQLVNG
HHHHHHCCCCCEEEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHEEEEECC
DADIIEQVPVDQAAALKGDPNIVVESNPSLYVNYVYMNNKRPPLDDARVRQAISYAVDYK
CHHHHHHCCCCHHHHCCCCCCEEEECCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHCHH
GIVDGIMQGQAEQMRGAVPDGMWAHDPNGFQYSYDVEKAKALLKEAGKSDIHLTYTFSQA
HHHHHHHCCCHHHHCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHCCCCCEEEEEEECCC
DTAWEPVGLALQANLADIGIKLDLQAVADTTKREMAASGNYDLAPGAWTPDFADPYMFMN
CCCCCCCCEEEECCHHHEEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEE
YWFDPDRMGGPGNRAFYNNPKVAGLVREAASIIDQPKREQLYLEAQKLSTQDAPYLYLMQ
EEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHEEEEHHHCCCCCCCEEEEEE
KNDIFARRAVVKGYVYNPMLIQVYNFATMSKSE
CCCHHHHHHHHHCEECCCEEEEEEEHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]