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The map label for this gene is ddpC [H]

Identifier: 13475569

GI number: 13475569

Start: 5467925

End: 5468818

Strand: Direct

Name: ddpC [H]

Synonym: mlr6673

Alternate gene names: 13475569

Gene position: 5467925-5468818 (Clockwise)

Preceding gene: 13475568

Following gene: 13475570

Centisome position: 77.71

GC content: 62.3

Gene sequence:

>894_bases
ATGAGCGTCGCATCTTCGACAACACAAAGTGTCGCCGCCGCCGCTGGCTGGAAGTCGCGATTACATTTTTTCTGGTATCT
GACCCGCCGCAGCCCACTGACGCTGGTTGGGGCGGTGATCATCTTGATGGTCATCGTGATGATCGTCGCCGCGCCGCTGA
TTGCACCCTACAATCCCGACAAGCTGATGCTGTCCGCGCGTCTGCAGCCACCGAGCGCGCTTCACTGGTTCGGTACCGAC
GAAGTCGGTCGCGACCTGTTTTCACGCATCATCTACGGGTCGCGTGCCTCATGCGTCGCGGCGTTCATGATCGTCCTGAT
ATCGGTGAGCATCGGCGTGATCATTGGCTGCATGTCTGCCATACTGGGTGGTCGCATCGATACGGCGATCATGCGACTGA
TGGATGTCATCATGGCGCTGCCGGCGCTGGTTCTGGCGATGGCGCTCGCGGCGGCACTCGGCCCGAGCCTGGTCAACTCG
ATGCTGGCCGTGGCGATGGTGCGCATACCGGCCTATGTGCGGCTGGCTCGCGGGCAGACGCTGTCCTTGAGGGAACGGGT
CTTCGTCAAGGCGGCGCGCACCTTCGGCGCCTCGCCACTCTACATCCTGCGCTGGCATGTCCTGCCCAATGCGATGTCGC
CGATCATCGTGCAGGCAACGCTTGACCTTGGCGGCATTGTGCTTATTGCCGCGGCGTTGAGCTTCATCGGACTTGGCGCA
CAGCCGCCGACGTCTGAATGGGGGGCGCTGGTCAGCACGGGGCGCAACTATATCCTCGACCAATGGTGGTACTGCACCTT
CCCCGGCCTTGCCATCCTGATCACCGCGATGGGCTGCAACCTGCTTGGCGACGGCATTCGCGACATGCTCGATCCACGGT
TGGGGGGACGATGA

Upstream 100 bases:

>100_bases
TGGGGTTCACCGTGGTTGCATCGATCGGCTACGTCCTCATCAACCTGATCGTCGACATCGCCTACATGTTCGCCGATCCG
CAGATCAGGGAGATCGGGTG

Downstream 100 bases:

>100_bases
TGGTGGCGGCATCCGAAATCCTGAAGCCTACCGGGCAAAAACCCGTGGCCCTGACTATCGACGGCCTGTCGCTGGAATTT
CCCACCTACGCCGGAGCGAT

Product: ATP-dependent peptide transporter membrane subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 296

Protein sequence:

>297_residues
MSVASSTTQSVAAAAGWKSRLHFFWYLTRRSPLTLVGAVIILMVIVMIVAAPLIAPYNPDKLMLSARLQPPSALHWFGTD
EVGRDLFSRIIYGSRASCVAAFMIVLISVSIGVIIGCMSAILGGRIDTAIMRLMDVIMALPALVLAMALAAALGPSLVNS
MLAVAMVRIPAYVRLARGQTLSLRERVFVKAARTFGASPLYILRWHVLPNAMSPIIVQATLDLGGIVLIAAALSFIGLGA
QPPTSEWGALVSTGRNYILDQWWYCTFPGLAILITAMGCNLLGDGIRDMLDPRLGGR

Sequences:

>Translated_297_residues
MSVASSTTQSVAAAAGWKSRLHFFWYLTRRSPLTLVGAVIILMVIVMIVAAPLIAPYNPDKLMLSARLQPPSALHWFGTD
EVGRDLFSRIIYGSRASCVAAFMIVLISVSIGVIIGCMSAILGGRIDTAIMRLMDVIMALPALVLAMALAAALGPSLVNS
MLAVAMVRIPAYVRLARGQTLSLRERVFVKAARTFGASPLYILRWHVLPNAMSPIIVQATLDLGGIVLIAAALSFIGLGA
QPPTSEWGALVSTGRNYILDQWWYCTFPGLAILITAMGCNLLGDGIRDMLDPRLGGR
>Mature_296_residues
SVASSTTQSVAAAAGWKSRLHFFWYLTRRSPLTLVGAVIILMVIVMIVAAPLIAPYNPDKLMLSARLQPPSALHWFGTDE
VGRDLFSRIIYGSRASCVAAFMIVLISVSIGVIIGCMSAILGGRIDTAIMRLMDVIMALPALVLAMALAAALGPSLVNSM
LAVAMVRIPAYVRLARGQTLSLRERVFVKAARTFGASPLYILRWHVLPNAMSPIIVQATLDLGGIVLIAAALSFIGLGAQ
PPTSEWGALVSTGRNYILDQWWYCTFPGLAILITAMGCNLLGDGIRDMLDPRLGGR

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787760, Length=272, Percent_Identity=58.8235294117647, Blast_Score=351, Evalue=3e-98,
Organism=Escherichia coli, GI1787054, Length=276, Percent_Identity=41.6666666666667, Blast_Score=226, Evalue=1e-60,
Organism=Escherichia coli, GI1789964, Length=294, Percent_Identity=42.1768707482993, Blast_Score=201, Evalue=5e-53,
Organism=Escherichia coli, GI1789889, Length=239, Percent_Identity=39.3305439330544, Blast_Score=180, Evalue=9e-47,
Organism=Escherichia coli, GI1787498, Length=276, Percent_Identity=34.7826086956522, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1787549, Length=240, Percent_Identity=35.4166666666667, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1788505, Length=225, Percent_Identity=29.3333333333333, Blast_Score=102, Evalue=4e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31853; Mature: 31721

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVASSTTQSVAAAAGWKSRLHFFWYLTRRSPLTLVGAVIILMVIVMIVAAPLIAPYNPD
CCCCCHHHHHHHHHHHHHHHHEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
KLMLSARLQPPSALHWFGTDEVGRDLFSRIIYGSRASCVAAFMIVLISVSIGVIIGCMSA
CEEEEECCCCCCCEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ILGGRIDTAIMRLMDVIMALPALVLAMALAAALGPSLVNSMLAVAMVRIPAYVRLARGQT
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCC
LSLRERVFVKAARTFGASPLYILRWHVLPNAMSPIIVQATLDLGGIVLIAAALSFIGLGA
HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEEEEHHCCCHHHHHHHHHHHHCCCC
QPPTSEWGALVSTGRNYILDQWWYCTFPGLAILITAMGCNLLGDGIRDMLDPRLGGR
CCCCHHHHHHHHCCCCHHHHCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SVASSTTQSVAAAAGWKSRLHFFWYLTRRSPLTLVGAVIILMVIVMIVAAPLIAPYNPD
CCCCHHHHHHHHHHHHHHHHEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
KLMLSARLQPPSALHWFGTDEVGRDLFSRIIYGSRASCVAAFMIVLISVSIGVIIGCMSA
CEEEEECCCCCCCEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ILGGRIDTAIMRLMDVIMALPALVLAMALAAALGPSLVNSMLAVAMVRIPAYVRLARGQT
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCC
LSLRERVFVKAARTFGASPLYILRWHVLPNAMSPIIVQATLDLGGIVLIAAALSFIGLGA
HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEEEEHHCCCHHHHHHHHHHHHCCCC
QPPTSEWGALVSTGRNYILDQWWYCTFPGLAILITAMGCNLLGDGIRDMLDPRLGGR
CCCCHHHHHHHHCCCCHHHHCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]