Click here to switch to the map view.

The map label for this gene is gabD [H]

Identifier: 13475140

GI number: 13475140

Start: 4977277

End: 4977474

Strand: Reverse

Name: gabD [H]

Synonym: msl8688

Alternate gene names: 13475140

Gene position: 4977474-4977277 (Counterclockwise)

Preceding gene: 13475141

Following gene: 13475139

Centisome position: 70.74

GC content: 61.62

Gene sequence:

>198_bases
ATGGAATTTCCCGGCTTCAATGGTGGCGCGCAAGATCTCACCGGCGCTGGCGGCGGCTGCACCGTGATATTGAAACCTGC
CGAACAGACGCCGCTTGTTGCAGGCGCAATGTGCGCGGCCGGCTTTCCCGAAGGCGTCGTCAACCTGATCCATGCTTGCA
AAGGCGATGCCGTCGGCCGCACGCTGATCAACCGATGA

Upstream 100 bases:

>100_bases
GAGGCCAACCGCATCTATGGCGAGACGATCTCCCCGCCCTCGACCGACCGGGAATGCTGGTGATCAAGCAGCCAGCCGGC
GTTGTTGGCACGATCACGCT

Downstream 100 bases:

>100_bases
ACTTGATCCACAGGCGCTTGAACCATGCGACGATGGCCTTGAGCCCTTTCGGCTGGGCGCCGCGCTTGAGAAGGCGTCAT
AGGCACGGCCGGCTTCGATC

Product: hypothetical protein

Products: NA

Alternate protein names: SSDH [H]

Number of amino acids: Translated: 65; Mature: 65

Protein sequence:

>65_residues
MEFPGFNGGAQDLTGAGGGCTVILKPAEQTPLVAGAMCAAGFPEGVVNLIHACKGDAVGRTLINR

Sequences:

>Translated_65_residues
MEFPGFNGGAQDLTGAGGGCTVILKPAEQTPLVAGAMCAAGFPEGVVNLIHACKGDAVGRTLINR
>Mature_65_residues
MEFPGFNGGAQDLTGAGGGCTVILKPAEQTPLVAGAMCAAGFPEGVVNLIHACKGDAVGRTLINR

Specific function: Catalyzes the NADP(+) dependent oxidation of succinate semialdehyde to succinate [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aldehyde dehydrogenase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016161
- InterPro:   IPR016163
- InterPro:   IPR016160
- InterPro:   IPR016162
- InterPro:   IPR015590
- InterPro:   IPR010102 [H]

Pfam domain/function: PF00171 Aldedh [H]

EC number: =1.2.1.79 [H]

Molecular weight: Translated: 6472; Mature: 6472

Theoretical pI: Translated: 5.64; Mature: 5.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
7.7 %Cys+Met (Translated Protein)
4.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
7.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFPGFNGGAQDLTGAGGGCTVILKPAEQTPLVAGAMCAAGFPEGVVNLIHACKGDAVGR
CCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCCH
TLINR
HHCCC
>Mature Secondary Structure
MEFPGFNGGAQDLTGAGGGCTVILKPAEQTPLVAGAMCAAGFPEGVVNLIHACKGDAVGR
CCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCCH
TLINR
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]