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The map label for this gene is sdiA [C]

Identifier: 13475096

GI number: 13475096

Start: 4941170

End: 4941895

Strand: Direct

Name: sdiA [C]

Synonym: mlr6102

Alternate gene names: 13475096

Gene position: 4941170-4941895 (Clockwise)

Preceding gene: 13475095

Following gene: 13475097

Centisome position: 70.23

GC content: 57.02

Gene sequence:

>726_bases
ATGCAGCTCGTCTTCGAAACATTGCTGGAACAGTTGTCTTTGAGCGTTGATGAAGTCGACTTCCATAACGCACTGGCCAG
CGCCGCTGGCGCCTTCGACATTCCCGCATTCGCCTATCTGTCTCTGGTGTCTGATCGCGTCACAAAACCCAGGCTGATAT
CGAACTATCATTCTGGCTGGACGTCGCACTACTTGCGCCACCAATATGAAAGGATCGACCCGGTCATAGAATGGGCAAGA
TGCAGCGAATGTCCCTTTCAGTGGGGACCGGGATTGGGCCATGCCGGCATTTCAACGCGGCAGCAACAGCTTTTCGATGA
GGCTGCCGAATTCGGCATCTGCTGCGGACTGACGATACCACTTGTTGATCGCCGCGGCGGTGTCGCTGCGATGACCTTCG
CGGCAGACAGGCTCGATCCGACCTTCCTGCGCGTCGCCGAGCAGTATGAGCAGGCGCTCGAGATTATGGCGATGTGCTTT
CACATTGGCGTTCGCCGCAAGCTTGCGCGTGGTCTGGCGGTGGATGGTGTTTCGTTGACGCCCCGTGAGTACGAATGCCT
GGAGTGGACGGCGAAGGGTAAGTCCGCATGGGAGATCGGCTGTATCCTGGGGATCAAGGAGCGCACGGCCGCTTTCCATT
TGGACAATGCCAAGAAGAAGCTCGGCGTCCGCACCAAAAATCAGGCAGTGACACTGCTGGCCTCCTCACGATCATCAATT
CTCTGA

Upstream 100 bases:

>100_bases
TTTTCTCCAGCGTCGAATATCTTGGGGGGCGAGTCTTCTCGCCGTAGCTGCCAAGAAGCCAGAAAGTCCCATGTCTAATT
GAAAACAGCCGCAGGAGAAA

Downstream 100 bases:

>100_bases
GGGACAGAATCCCTTTTTGATCTACCTGTACAAATGCACAGGCAGTCGCGGCATGAAGGTTCGCCTCCAATGGCAGGGTC
ATACCTGCGAGGAGACCATC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MQLVFETLLEQLSLSVDEVDFHNALASAAGAFDIPAFAYLSLVSDRVTKPRLISNYHSGWTSHYLRHQYERIDPVIEWAR
CSECPFQWGPGLGHAGISTRQQQLFDEAAEFGICCGLTIPLVDRRGGVAAMTFAADRLDPTFLRVAEQYEQALEIMAMCF
HIGVRRKLARGLAVDGVSLTPREYECLEWTAKGKSAWEIGCILGIKERTAAFHLDNAKKKLGVRTKNQAVTLLASSRSSI
L

Sequences:

>Translated_241_residues
MQLVFETLLEQLSLSVDEVDFHNALASAAGAFDIPAFAYLSLVSDRVTKPRLISNYHSGWTSHYLRHQYERIDPVIEWAR
CSECPFQWGPGLGHAGISTRQQQLFDEAAEFGICCGLTIPLVDRRGGVAAMTFAADRLDPTFLRVAEQYEQALEIMAMCF
HIGVRRKLARGLAVDGVSLTPREYECLEWTAKGKSAWEIGCILGIKERTAAFHLDNAKKKLGVRTKNQAVTLLASSRSSI
L
>Mature_241_residues
MQLVFETLLEQLSLSVDEVDFHNALASAAGAFDIPAFAYLSLVSDRVTKPRLISNYHSGWTSHYLRHQYERIDPVIEWAR
CSECPFQWGPGLGHAGISTRQQQLFDEAAEFGICCGLTIPLVDRRGGVAAMTFAADRLDPTFLRVAEQYEQALEIMAMCF
HIGVRRKLARGLAVDGVSLTPREYECLEWTAKGKSAWEIGCILGIKERTAAFHLDNAKKKLGVRTKNQAVTLLASSRSSI
L

Specific function: Activates Cell Division By Specifically Increasing Transcription From One Of The Two Promoters That Lie Immediately Upstream Of The Ftsqaz Gene Cluster. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788224, Length=193, Percent_Identity=25.9067357512953, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR005143
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03472 Autoind_bind; PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 26819; Mature: 26819

Theoretical pI: Translated: 7.14; Mature: 7.14

Prosite motif: PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLVFETLLEQLSLSVDEVDFHNALASAAGAFDIPAFAYLSLVSDRVTKPRLISNYHSGW
CHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHCCCH
TSHYLRHQYERIDPVIEWARCSECPFQWGPGLGHAGISTRQQQLFDEAAEFGICCGLTIP
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEECCCEEE
LVDRRGGVAAMTFAADRLDPTFLRVAEQYEQALEIMAMCFHIGVRRKLARGLAVDGVSLT
EEECCCCEEEEEEHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PREYECLEWTAKGKSAWEIGCILGIKERTAAFHLDNAKKKLGVRTKNQAVTLLASSRSSI
CCCHHHHHHHCCCCCCEEEEEEEECHHHHHHEEECCHHHHHCCCCCCCEEEEEECCCCCC
L
C
>Mature Secondary Structure
MQLVFETLLEQLSLSVDEVDFHNALASAAGAFDIPAFAYLSLVSDRVTKPRLISNYHSGW
CHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHCCCH
TSHYLRHQYERIDPVIEWARCSECPFQWGPGLGHAGISTRQQQLFDEAAEFGICCGLTIP
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEECCCEEE
LVDRRGGVAAMTFAADRLDPTFLRVAEQYEQALEIMAMCFHIGVRRKLARGLAVDGVSLT
EEECCCCEEEEEEHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PREYECLEWTAKGKSAWEIGCILGIKERTAAFHLDNAKKKLGVRTKNQAVTLLASSRSSI
CCCHHHHHHHCCCCCCEEEEEEEECHHHHHHEEECCHHHHHCCCCCCCEEEEEECCCCCC
L
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]