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The map label for this gene is nifU [H]

Identifier: 13474946

GI number: 13474946

Start: 4805386

End: 4805847

Strand: Reverse

Name: nifU [H]

Synonym: mll5941

Alternate gene names: 13474946

Gene position: 4805847-4805386 (Counterclockwise)

Preceding gene: 13474947

Following gene: 13474945

Centisome position: 68.3

GC content: 57.14

Gene sequence:

>462_bases
GTGCGGGATAATACCGACAACGTCTACCTCTTCAGCGACAAGCTCTATTTCATCAATCCGCACAATGTCGGCGTTTTGGA
CATCCCCAATGCAGCCGGCGAGGTCGGCGCCGTCGCCTGCGGCGACGGGCTTAAATTGATGATGGGTTTCGACCCCAAGA
CCGAGACGATTACTGCCGCAACGTTCCAGACCTTCGGCCGCGGCTCGGCCATAACCGCTTCCTCGACAATTACCCAATTC
ATCGTCGGCAAGACCATCGATGAAGCCCTTCAGATCACCGATCAGGAAATGGCAGATTTTCTCGGCGCCCTGCCGCCGCA
CACGATATACTCATCGCTCGACCGCCTCATTTTGGAGCGCGGTTTGCGGCTGATGAGCGAGTTCTTCCATGCTGTGAGGC
AGGCTTTCGAGGAGACGCCAGGATTCTCACGCCTCGTCCTCGTCAAGGCATCATCGCCATGA

Upstream 100 bases:

>100_bases
TGGAGTCCTCGGGCTTTGTCTTCGACAATCCCAATGCGCGGGACAAATGTGCCTGCGGCAAGTCCTTCGGCTAGCCGCCA
TCACGACAAGGATCGGCACC

Downstream 100 bases:

>100_bases
GTGAGGTGATAGGGGCGTTTCTCGAGGTGATAGGCTTCGATGAGCGAGAGGCCCTTCCCCGCAGCCTTCCCCCGCTGAAA
CCCAATTCTGCGTGCACTTC

Product: nitrogen fixation protein nifU

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 153; Mature: 153

Protein sequence:

>153_residues
MRDNTDNVYLFSDKLYFINPHNVGVLDIPNAAGEVGAVACGDGLKLMMGFDPKTETITAATFQTFGRGSAITASSTITQF
IVGKTIDEALQITDQEMADFLGALPPHTIYSSLDRLILERGLRLMSEFFHAVRQAFEETPGFSRLVLVKASSP

Sequences:

>Translated_153_residues
MRDNTDNVYLFSDKLYFINPHNVGVLDIPNAAGEVGAVACGDGLKLMMGFDPKTETITAATFQTFGRGSAITASSTITQF
IVGKTIDEALQITDQEMADFLGALPPHTIYSSLDRLILERGLRLMSEFFHAVRQAFEETPGFSRLVLVKASSP
>Mature_153_residues
MRDNTDNVYLFSDKLYFINPHNVGVLDIPNAAGEVGAVACGDGLKLMMGFDPKTETITAATFQTFGRGSAITASSTITQF
IVGKTIDEALQITDQEMADFLGALPPHTIYSSLDRLILERGLRLMSEFFHAVRQAFEETPGFSRLVLVKASSP

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

Organism=Homo sapiens, GI56699456, Length=117, Percent_Identity=41.025641025641, Blast_Score=79, Evalue=1e-15,
Organism=Homo sapiens, GI24307953, Length=101, Percent_Identity=44.5544554455446, Blast_Score=79, Evalue=2e-15,
Organism=Escherichia coli, GI1788878, Length=130, Percent_Identity=35.3846153846154, Blast_Score=74, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17543474, Length=101, Percent_Identity=45.5445544554455, Blast_Score=76, Evalue=7e-15,
Organism=Saccharomyces cerevisiae, GI6324800, Length=101, Percent_Identity=41.5841584158416, Blast_Score=77, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6325122, Length=101, Percent_Identity=41.5841584158416, Blast_Score=76, Evalue=2e-15,
Organism=Drosophila melanogaster, GI21355597, Length=101, Percent_Identity=42.5742574257426, Blast_Score=76, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007419
- InterPro:   IPR016217
- InterPro:   IPR010238
- InterPro:   IPR001075
- InterPro:   IPR002871
- ProDom:   PD002830 [H]

Pfam domain/function: PF04324 Fer2_BFD; PF01106 NifU; PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 16692; Mature: 16692

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDNTDNVYLFSDKLYFINPHNVGVLDIPNAAGEVGAVACGDGLKLMMGFDPKTETITAA
CCCCCCCEEEEECEEEEECCCCEEEEECCCCCCCCCEEEECCCEEEEECCCCCCCEEEHH
TFQTFGRGSAITASSTITQFIVGKTIDEALQITDQEMADFLGALPPHTIYSSLDRLILER
HHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
GLRLMSEFFHAVRQAFEETPGFSRLVLVKASSP
HHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC
>Mature Secondary Structure
MRDNTDNVYLFSDKLYFINPHNVGVLDIPNAAGEVGAVACGDGLKLMMGFDPKTETITAA
CCCCCCCEEEEECEEEEECCCCEEEEECCCCCCCCCEEEECCCEEEEECCCCCCCEEEHH
TFQTFGRGSAITASSTITQFIVGKTIDEALQITDQEMADFLGALPPHTIYSSLDRLILER
HHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
GLRLMSEFFHAVRQAFEETPGFSRLVLVKASSP
HHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3062178; 3054814; 3040672 [H]