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The map label for this gene is ygcF [C]

Identifier: 13474945

GI number: 13474945

Start: 4804514

End: 4805149

Strand: Reverse

Name: ygcF [C]

Synonym: msl8680

Alternate gene names: 13474945

Gene position: 4805149-4804514 (Counterclockwise)

Preceding gene: 13474946

Following gene: 13474944

Centisome position: 68.29

GC content: 58.02

Gene sequence:

>636_bases
ATGTCATATGCGGTCAAGGAAATTTTCTACACCCTTCAAGGTGAAGGACGAAATGCCGGGCGGGCCGCCGTGTTTTGTCG
TTTCGCCGGCTGTAACCTTTGGTCGGGACGTGAAGGCGACCGGGCAAAAGCATTCTGCGGATTTTGCGACACCGATTTCG
TTGGCGTAGATGGCCCCGGTGGCCGACATTTTGACACCGCACGGCAGCTTGCGTTGGCGGTCGAGCAAGCCTGGCGCGGG
CAGGGAGCTGGGCAGCGTTTTGTCGTGCTCACCGGAGGGGAACCCCTCCTCCAGATCGATGAAGAACTCTTGGAAGCGCT
GCATTGCTTGGCGTTTGAAATTGCCGTGGAGACCAATGGTACCATCCCCACACCCGCCGGCATCGACTGGCTGTGCGTCA
GTCCGAAATGCAATGCACGCCTCGTGGTCATGGCAGGGGACGAGCTAAAGCTTGTATATCCTCAGATTGGCGCGGAGCCC
GAACATTTCGAAGTTCTCGCGTTTGAGCACCTTTTGCTTCAGCCGATGGATGGGCCCGAGCGCGAGGCGAATACGGCCGC
CGCAGTGGCCTATTGTCTTGCCAACCCACGTTGGCGCTTGAGCCTTCAAACCCACAAATTTCTCGGAATCCCATGA

Upstream 100 bases:

>100_bases
GAACGAGCTGCAAAACCTGCAGTGGGACATTTCCCACCTTTTGCCGCGTCTCGTAAGCCAGCAGAGATGCTGCCTTGCTC
ACTCGAAGGCCGCTTAAGCA

Downstream 100 bases:

>100_bases
AGATTACGCAAGCTTTCACCTTCGAGGCGGCGCACTGTCTTCCGCGGGTGCCAGCAACCCACCGCTGTCACCGCATACAT
GGCCATTCCTACCGTGTGGA

Product: hypothetical protein

Products: NA

Alternate protein names: Organic Radical Activating Protein; Radical SAM Domain Protein; Organic Radical Activating; Radical Activating; Radical Sam Domain Protein; Organic Radical Activating-Like Protein; Queuosine Biosynthesis Protein QueE; NrdG Protein; Radical SAM; Organic Radical Activating Protein; Radical SAM Superfamily Protein; Radical SAM Family Protein; 50S Ribosomal Protein L; QueC Protein; 6- Pyruvoyltetrahydropterin 2-Reductase; Queuosine Biosynthesis QueE Radical SAM; Anaerobic Ribonucleotide Reductase Activating Protein NrdG; GntS Family Protein; Radical SAM Superfamily

Number of amino acids: Translated: 211; Mature: 210

Protein sequence:

>211_residues
MSYAVKEIFYTLQGEGRNAGRAAVFCRFAGCNLWSGREGDRAKAFCGFCDTDFVGVDGPGGRHFDTARQLALAVEQAWRG
QGAGQRFVVLTGGEPLLQIDEELLEALHCLAFEIAVETNGTIPTPAGIDWLCVSPKCNARLVVMAGDELKLVYPQIGAEP
EHFEVLAFEHLLLQPMDGPEREANTAAAVAYCLANPRWRLSLQTHKFLGIP

Sequences:

>Translated_211_residues
MSYAVKEIFYTLQGEGRNAGRAAVFCRFAGCNLWSGREGDRAKAFCGFCDTDFVGVDGPGGRHFDTARQLALAVEQAWRG
QGAGQRFVVLTGGEPLLQIDEELLEALHCLAFEIAVETNGTIPTPAGIDWLCVSPKCNARLVVMAGDELKLVYPQIGAEP
EHFEVLAFEHLLLQPMDGPEREANTAAAVAYCLANPRWRLSLQTHKFLGIP
>Mature_210_residues
SYAVKEIFYTLQGEGRNAGRAAVFCRFAGCNLWSGREGDRAKAFCGFCDTDFVGVDGPGGRHFDTARQLALAVEQAWRGQ
GAGQRFVVLTGGEPLLQIDEELLEALHCLAFEIAVETNGTIPTPAGIDWLCVSPKCNARLVVMAGDELKLVYPQIGAEPE
HFEVLAFEHLLLQPMDGPEREANTAAAVAYCLANPRWRLSLQTHKFLGIP

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23039; Mature: 22907

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
3.8 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYAVKEIFYTLQGEGRNAGRAAVFCRFAGCNLWSGREGDRAKAFCGFCDTDFVGVDGPG
CCHHHEEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCCCEEECCCCCCEEECCCCC
GRHFDTARQLALAVEQAWRGQGAGQRFVVLTGGEPLLQIDEELLEALHCLAFEIAVETNG
CCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHEEEEEEECCC
TIPTPAGIDWLCVSPKCNARLVVMAGDELKLVYPQIGAEPEHFEVLAFEHLLLQPMDGPE
CCCCCCCCEEEEECCCCCEEEEEEECCCEEEECCCCCCCCCCEEEEEEHHHHHCCCCCCC
REANTAAAVAYCLANPRWRLSLQTHKFLGIP
CCCHHHHHHHHHHCCCCEEEEEECCEEECCC
>Mature Secondary Structure 
SYAVKEIFYTLQGEGRNAGRAAVFCRFAGCNLWSGREGDRAKAFCGFCDTDFVGVDGPG
CHHHEEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCCCEEECCCCCCEEECCCCC
GRHFDTARQLALAVEQAWRGQGAGQRFVVLTGGEPLLQIDEELLEALHCLAFEIAVETNG
CCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHEEEEEEECCC
TIPTPAGIDWLCVSPKCNARLVVMAGDELKLVYPQIGAEPEHFEVLAFEHLLLQPMDGPE
CCCCCCCCEEEEECCCCCEEEEEEECCCEEEECCCCCCCCCCEEEEEEHHHHHCCCCCCC
REANTAAAVAYCLANPRWRLSLQTHKFLGIP
CCCHHHHHHHHHHCCCCEEEEEECCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA