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The map label for this gene is rimP

Identifier: 13474626

GI number: 13474626

Start: 4453844

End: 4454491

Strand: Direct

Name: rimP

Synonym: mlr5550

Alternate gene names: 13474626

Gene position: 4453844-4454491 (Clockwise)

Preceding gene: 13474624

Following gene: 13474627

Centisome position: 63.3

GC content: 61.88

Gene sequence:

>648_bases
ATGACTGCAACGGCAAGCGAAGGTGACGATCGCATCATCCGCGAAAGCGGCATCGATGCGCGCATTGCGCTGATCGTCCA
GCCGGTGCTGCGCGGCATAGGCTTTCGCCTCGTGCGGGTGCATCTGTCCGGCCAGAACGGGCTGACGCTGCAGATCATGG
CCGAACGCGAGGACGGCACCATGACCGTCGAGGATTGCGAAGAGGTCAGCCGCGCGGTGTCACCGGCGCTCGATGTCGAT
GATCCGATCGAAAAGGCCTATCATCTCGAAGTCTCTTCGCCCGGCATCGACCGACCGCTGGTGCGCAAATCGGATTTCGT
GACCTGGACCGGTCATCTGGTGAAGATGGAAACATCGGTCATCGTCGCGGATCGCAAGCGCTTCAAGGGCAAGATTGCCG
AGGCCGGTGAGAACGACGTGCTGATCGAGCGCGACAAGGCGGCCTATGGCGAGGAACCGACGGTGCGCGTGCCTTACGAC
GCCATTGCCGAAACCCGGCTGATCCTGACCGACGACCTCATTCGCGATGCGTTGTCGAAGGACAACAGGGCGCGCAAGGA
AGCCAAGAAACGCCGCGGTGAACCGGATGACGACGTGCCCGAGGGTGCGGAAGCGGACGCCACGGAAGAACACGAACAGG
AAAGTTGA

Upstream 100 bases:

>100_bases
ATATCAGCCTCAAATTCTTGGTCGGTATGACGAAGAGTGGGTCCACCCGGTCCCGCTCTTTTTTATTACCTGCCGATAGG
TTCGAAACGACAGGTACTTG

Downstream 100 bases:

>100_bases
TTGAGCTGCCGGGTCCAAAGGTCCGGCAAACAGGCTCGGGAGAAAAAACATGGTTGTAAGCGCCAACAGACTTGAACTGC
TGCAGATTGCCGACGCGGTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 214

Protein sequence:

>215_residues
MTATASEGDDRIIRESGIDARIALIVQPVLRGIGFRLVRVHLSGQNGLTLQIMAEREDGTMTVEDCEEVSRAVSPALDVD
DPIEKAYHLEVSSPGIDRPLVRKSDFVTWTGHLVKMETSVIVADRKRFKGKIAEAGENDVLIERDKAAYGEEPTVRVPYD
AIAETRLILTDDLIRDALSKDNRARKEAKKRRGEPDDDVPEGAEADATEEHEQES

Sequences:

>Translated_215_residues
MTATASEGDDRIIRESGIDARIALIVQPVLRGIGFRLVRVHLSGQNGLTLQIMAEREDGTMTVEDCEEVSRAVSPALDVD
DPIEKAYHLEVSSPGIDRPLVRKSDFVTWTGHLVKMETSVIVADRKRFKGKIAEAGENDVLIERDKAAYGEEPTVRVPYD
AIAETRLILTDDLIRDALSKDNRARKEAKKRRGEPDDDVPEGAEADATEEHEQES
>Mature_214_residues
TATASEGDDRIIRESGIDARIALIVQPVLRGIGFRLVRVHLSGQNGLTLQIMAEREDGTMTVEDCEEVSRAVSPALDVDD
PIEKAYHLEVSSPGIDRPLVRKSDFVTWTGHLVKMETSVIVADRKRFKGKIAEAGENDVLIERDKAAYGEEPTVRVPYDA
IAETRLILTDDLIRDALSKDNRARKEAKKRRGEPDDDVPEGAEADATEEHEQES

Specific function: Required for maturation of 30S ribosomal subunits

COG id: COG0779

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rimP family

Homologues:

Organism=Escherichia coli, GI226510978, Length=109, Percent_Identity=41.2844036697248, Blast_Score=81, Evalue=5e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMP_RHILO (Q98BJ1)

Other databases:

- EMBL:   BA000012
- RefSeq:   NP_106195.1
- ProteinModelPortal:   Q98BJ1
- SMR:   Q98BJ1
- GeneID:   1228856
- GenomeReviews:   BA000012_GR
- KEGG:   mlo:mlr5550
- NMPDR:   fig|266835.1.peg.4299
- HOGENOM:   HBG668072
- OMA:   CTVQIMA
- ProtClustDB:   PRK00092
- GO:   GO:0005737
- HAMAP:   MF_01077
- InterPro:   IPR003728

Pfam domain/function: PF02576 DUF150

EC number: NA

Molecular weight: Translated: 23847; Mature: 23716

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTATASEGDDRIIRESGIDARIALIVQPVLRGIGFRLVRVHLSGQNGLTLQIMAEREDGT
CCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEEEECCCCC
MTVEDCEEVSRAVSPALDVDDPIEKAYHLEVSSPGIDRPLVRKSDFVTWTGHLVKMETSV
EEHHHHHHHHHHHCCCCCCCCHHHHEEEEEECCCCCCCCCCCCCCEEEECCEEEEEEEEE
IVADRKRFKGKIAEAGENDVLIERDKAAYGEEPTVRVPYDAIAETRLILTDDLIRDALSK
EEECHHHHCCHHHCCCCCCEEEECCCCCCCCCCEEECCHHHHHHEEHEEHHHHHHHHHCC
DNRARKEAKKRRGEPDDDVPEGAEADATEEHEQES
CHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCC
>Mature Secondary Structure 
TATASEGDDRIIRESGIDARIALIVQPVLRGIGFRLVRVHLSGQNGLTLQIMAEREDGT
CCCCCCCCCHHHHHCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEEEECCCCC
MTVEDCEEVSRAVSPALDVDDPIEKAYHLEVSSPGIDRPLVRKSDFVTWTGHLVKMETSV
EEHHHHHHHHHHHCCCCCCCCHHHHEEEEEECCCCCCCCCCCCCCEEEECCEEEEEEEEE
IVADRKRFKGKIAEAGENDVLIERDKAAYGEEPTVRVPYDAIAETRLILTDDLIRDALSK
EEECHHHHCCHHHCCCCCCEEEECCCCCCCCCCEEECCHHHHHHEEHEEHHHHHHHHHCC
DNRARKEAKKRRGEPDDDVPEGAEADATEEHEQES
CHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11214968