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The map label for this gene is ddpA [H]

Identifier: 13474595

GI number: 13474595

Start: 4420295

End: 4422100

Strand: Direct

Name: ddpA [H]

Synonym: mlr5513

Alternate gene names: 13474595

Gene position: 4420295-4422100 (Clockwise)

Preceding gene: 13474594

Following gene: 13474596

Centisome position: 62.82

GC content: 60.69

Gene sequence:

>1806_bases
ATGCTCGTTGCCCGCCACGAGATCGCTGGATATGCTGTTGACCAATTGGACAAAAACCACGACGGTAAGGGGTTAGAGGC
CGTCCTCCGGCCCCGACAAGAATTCTGCAATCCTGAGCCGGGAACTCAGGTCAACAAACCAACAAAACAGGGAACAATCA
CCATGATGATGGAAAAGTTTGCTCTTCGCTCGCGTGCCTTGCTTGCGGGCGCGGCGATGTCCGCGCTGCTCGTTGGCGCA
GCGCCTGCCTTCGCGGTCACACCCGCCGACACGCTGGTCGAGGGCTTCGCCATCGACGACATCATCTCCATGGATCCGGG
CGAGGCGTTCGAACTGTCGACCGCCGAAGTCACCGGCAACACCTATGACCTGCTGGTGCGCCTCGACCTCAGCGACACTT
CCAAGGTCAAGCCCGATCTCGCGGAGAGCTGGACCGTCTCCGACGACGGCCTGACCTACACGTTCAAGCTCAAGCCGGGC
CTCAAATTCGCCTCGGGCAATCCGATCACCGCGGCCGACGTCGCCTATTCGTTCGAACGCGCCGTGAAGCTGGACAAGAG
CCCGGCCTTCATCATCGACCAGTTCGGTATCAGCGGTGACAACGTCACCGAAAAGGCCAAGGCAATCGACGACACCACAT
TCCAGTTCACCGTCGACAAGGCCTATGCGCCGAGCTTCGTGCTGAACTGCCTGTCGGCCACGGTCGCTTCCGTTGTCGAC
GCCAAGCTGGTCAAGGAGCATGTCGCCGCGGTGACGCCGAGCGCCGACTACAAATGGGACAACGACTTCGGCAATGCCTG
GCTGAAGACCGGCTATGCCGGTTCCGGCGCCTACAAGCTGCGCGAATGGCGCGCCAACGAAGCCGTCGTCATGGAGCGCA
ACGACAATTATCACGGTGAAAAGGCCAAGCTCGCCCGCGTCATCTACCGCAACATGAAGGAAAGCTCGGCTCAGCGCCTG
GCGCTCGAAGCCGGTGACATCGACGTTGCCCGCAACCTCGAGCCGAACGACCTCGACGCCATCGCCAAGAACGCCGATCT
CACCACCACCAGCGCGCCGAAGGGCACGGTCTATTACATCAGCCTGAACCAGAAGAACCCGAACCTCGCCAAGCCCGAGG
TTCGCCAGGCCTTCAAATACCTGGTCGACTACGATGCGCTAAGCTCGACCATCCTCAAGGGTATCGGCGAAATCCACCAG
TCATTCCTGCCCAAGGGCGATCTCGGCGCCATCGACGCCAATCCCTTCAAGCTCGACGTTGCCAAGGCCAAGGAATTGCT
GGCCAAGGCCGGCCTGGCCGACGGCTTCAGCGTCACCATGGACGTGCGCACCGGCCAGCCGACCACCGGCATGGCGGAAT
CGATCCAGCAGACTCTGGGCCAGGCCGGCATCAAGCTGGAAATCATCCCCGGCGACGGCAAGCAGACGCTGACCAAGTAC
CGCGCCCGCAACCATGACATCTATATCGGCAATTGGGGCCAGGATTATTTCGATCCGAACTCCAACGCCCAGACCTTCGC
CTCCAACCCCGACAATTCGGATGCCGGCAAGTCGCACACGCTCGCCTGGCGCAATTCCTGGGACATTCCGGACCTGACCA
AGGAAACCGAAGCGGCACTGCTGGAGAAGGATGCAGGCAAGCGGGCTGATATGTACAAGGATTTGCAGCAGAAGATCCTC
GACACCAGCCCCTTCGTCATCATCCATCAGCAATTGGAAGTGGCCGGGCTGCGCAAGAACCTCAAGGGCTTCGCGCTCGG
TCCGAGCTTCGACAGCAACTTCGTCGGCCCGGTCTCGAAAGAATAA

Upstream 100 bases:

>100_bases
ACTCAAAAATCAGCAGATTTTTTTCGTTAGGCCGCCTCGATTGGCCGGCTTGTGCCTCGACGCGCCACCCGCCATTCTGC
TCCAATCGGATGTCGCACAA

Downstream 100 bases:

>100_bases
AGTCGACGGACGCGCCACATGAGCGCGATTGAAAACGAGAGCGGGCGCGGTAGCGCCCGCGCCGTCGCCATTGCGTCGGC
GATTGGCCGTTTCCTGGTCA

Product: ABC transporter, periplasmic oligopeptide-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 601; Mature: 601

Protein sequence:

>601_residues
MLVARHEIAGYAVDQLDKNHDGKGLEAVLRPRQEFCNPEPGTQVNKPTKQGTITMMMEKFALRSRALLAGAAMSALLVGA
APAFAVTPADTLVEGFAIDDIISMDPGEAFELSTAEVTGNTYDLLVRLDLSDTSKVKPDLAESWTVSDDGLTYTFKLKPG
LKFASGNPITAADVAYSFERAVKLDKSPAFIIDQFGISGDNVTEKAKAIDDTTFQFTVDKAYAPSFVLNCLSATVASVVD
AKLVKEHVAAVTPSADYKWDNDFGNAWLKTGYAGSGAYKLREWRANEAVVMERNDNYHGEKAKLARVIYRNMKESSAQRL
ALEAGDIDVARNLEPNDLDAIAKNADLTTTSAPKGTVYYISLNQKNPNLAKPEVRQAFKYLVDYDALSSTILKGIGEIHQ
SFLPKGDLGAIDANPFKLDVAKAKELLAKAGLADGFSVTMDVRTGQPTTGMAESIQQTLGQAGIKLEIIPGDGKQTLTKY
RARNHDIYIGNWGQDYFDPNSNAQTFASNPDNSDAGKSHTLAWRNSWDIPDLTKETEAALLEKDAGKRADMYKDLQQKIL
DTSPFVIIHQQLEVAGLRKNLKGFALGPSFDSNFVGPVSKE

Sequences:

>Translated_601_residues
MLVARHEIAGYAVDQLDKNHDGKGLEAVLRPRQEFCNPEPGTQVNKPTKQGTITMMMEKFALRSRALLAGAAMSALLVGA
APAFAVTPADTLVEGFAIDDIISMDPGEAFELSTAEVTGNTYDLLVRLDLSDTSKVKPDLAESWTVSDDGLTYTFKLKPG
LKFASGNPITAADVAYSFERAVKLDKSPAFIIDQFGISGDNVTEKAKAIDDTTFQFTVDKAYAPSFVLNCLSATVASVVD
AKLVKEHVAAVTPSADYKWDNDFGNAWLKTGYAGSGAYKLREWRANEAVVMERNDNYHGEKAKLARVIYRNMKESSAQRL
ALEAGDIDVARNLEPNDLDAIAKNADLTTTSAPKGTVYYISLNQKNPNLAKPEVRQAFKYLVDYDALSSTILKGIGEIHQ
SFLPKGDLGAIDANPFKLDVAKAKELLAKAGLADGFSVTMDVRTGQPTTGMAESIQQTLGQAGIKLEIIPGDGKQTLTKY
RARNHDIYIGNWGQDYFDPNSNAQTFASNPDNSDAGKSHTLAWRNSWDIPDLTKETEAALLEKDAGKRADMYKDLQQKIL
DTSPFVIIHQQLEVAGLRKNLKGFALGPSFDSNFVGPVSKE
>Mature_601_residues
MLVARHEIAGYAVDQLDKNHDGKGLEAVLRPRQEFCNPEPGTQVNKPTKQGTITMMMEKFALRSRALLAGAAMSALLVGA
APAFAVTPADTLVEGFAIDDIISMDPGEAFELSTAEVTGNTYDLLVRLDLSDTSKVKPDLAESWTVSDDGLTYTFKLKPG
LKFASGNPITAADVAYSFERAVKLDKSPAFIIDQFGISGDNVTEKAKAIDDTTFQFTVDKAYAPSFVLNCLSATVASVVD
AKLVKEHVAAVTPSADYKWDNDFGNAWLKTGYAGSGAYKLREWRANEAVVMERNDNYHGEKAKLARVIYRNMKESSAQRL
ALEAGDIDVARNLEPNDLDAIAKNADLTTTSAPKGTVYYISLNQKNPNLAKPEVRQAFKYLVDYDALSSTILKGIGEIHQ
SFLPKGDLGAIDANPFKLDVAKAKELLAKAGLADGFSVTMDVRTGQPTTGMAESIQQTLGQAGIKLEIIPGDGKQTLTKY
RARNHDIYIGNWGQDYFDPNSNAQTFASNPDNSDAGKSHTLAWRNSWDIPDLTKETEAALLEKDAGKRADMYKDLQQKIL
DTSPFVIIHQQLEVAGLRKNLKGFALGPSFDSNFVGPVSKE

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787762, Length=517, Percent_Identity=28.2398452611219, Blast_Score=175, Evalue=8e-45,
Organism=Escherichia coli, GI1789966, Length=557, Percent_Identity=26.2118491921005, Blast_Score=149, Evalue=6e-37,
Organism=Escherichia coli, GI1787052, Length=518, Percent_Identity=25.4826254826255, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI1787551, Length=551, Percent_Identity=25.2268602540835, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI1789887, Length=516, Percent_Identity=27.3255813953488, Blast_Score=114, Evalue=3e-26,
Organism=Escherichia coli, GI1787495, Length=562, Percent_Identity=23.6654804270463, Blast_Score=107, Evalue=3e-24,
Organism=Escherichia coli, GI1789397, Length=542, Percent_Identity=24.169741697417, Blast_Score=96, Evalue=7e-21,
Organism=Escherichia coli, GI87081878, Length=522, Percent_Identity=24.7126436781609, Blast_Score=92, Evalue=7e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 65399; Mature: 65399

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVARHEIAGYAVDQLDKNHDGKGLEAVLRPRQEFCNPEPGTQVNKPTKQGTITMMMEKF
CEEECCHHCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
ALRSRALLAGAAMSALLVGAAPAFAVTPADTLVEGFAIDDIISMDPGEAFELSTAEVTGN
HHHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHCHHHHHHHCCCCCCCEEEEEEEECCC
TYDLLVRLDLSDTSKVKPDLAESWTVSDDGLTYTFKLKPGLKFASGNPITAADVAYSFER
EEEEEEEEECCCCCCCCCCCCCCCEECCCCEEEEEEECCCCEECCCCCCCHHHHHHHHHH
AVKLDKSPAFIIDQFGISGDNVTEKAKAIDDTTFQFTVDKAYAPSFVLNCLSATVASVVD
HHHCCCCCCEEEEECCCCCCCHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHH
AKLVKEHVAAVTPSADYKWDNDFGNAWLKTGYAGSGAYKLREWRANEAVVMERNDNYHGE
HHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHEECCCCEEEEECCCCCCCH
KAKLARVIYRNMKESSAQRLALEAGDIDVARNLEPNDLDAIAKNADLTTTSAPKGTVYYI
HHHHHHHHHHHHHHHHHHEEEEECCCEEEECCCCCCHHHHHHCCCCCEECCCCCCEEEEE
SLNQKNPNLAKPEVRQAFKYLVDYDALSSTILKGIGEIHQSFLPKGDLGAIDANPFKLDV
EEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEH
AKAKELLAKAGLADGFSVTMDVRTGQPTTGMAESIQQTLGQAGIKLEIIPGDGKQTLTKY
HHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHH
RARNHDIYIGNWGQDYFDPNSNAQTFASNPDNSDAGKSHTLAWRNSWDIPDLTKETEAAL
HHCCCCEEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHH
LEKDAGKRADMYKDLQQKILDTSPFVIIHQQLEVAGLRKNLKGFALGPSFDSNFVGPVSK
HHHCCCCHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCCEEECCCCCCCCCCCCCC
E
C
>Mature Secondary Structure
MLVARHEIAGYAVDQLDKNHDGKGLEAVLRPRQEFCNPEPGTQVNKPTKQGTITMMMEKF
CEEECCHHCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
ALRSRALLAGAAMSALLVGAAPAFAVTPADTLVEGFAIDDIISMDPGEAFELSTAEVTGN
HHHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHCHHHHHHHCCCCCCCEEEEEEEECCC
TYDLLVRLDLSDTSKVKPDLAESWTVSDDGLTYTFKLKPGLKFASGNPITAADVAYSFER
EEEEEEEEECCCCCCCCCCCCCCCEECCCCEEEEEEECCCCEECCCCCCCHHHHHHHHHH
AVKLDKSPAFIIDQFGISGDNVTEKAKAIDDTTFQFTVDKAYAPSFVLNCLSATVASVVD
HHHCCCCCCEEEEECCCCCCCHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHH
AKLVKEHVAAVTPSADYKWDNDFGNAWLKTGYAGSGAYKLREWRANEAVVMERNDNYHGE
HHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHEECCCCEEEEECCCCCCCH
KAKLARVIYRNMKESSAQRLALEAGDIDVARNLEPNDLDAIAKNADLTTTSAPKGTVYYI
HHHHHHHHHHHHHHHHHHEEEEECCCEEEECCCCCCHHHHHHCCCCCEECCCCCCEEEEE
SLNQKNPNLAKPEVRQAFKYLVDYDALSSTILKGIGEIHQSFLPKGDLGAIDANPFKLDV
EEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEH
AKAKELLAKAGLADGFSVTMDVRTGQPTTGMAESIQQTLGQAGIKLEIIPGDGKQTLTKY
HHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHH
RARNHDIYIGNWGQDYFDPNSNAQTFASNPDNSDAGKSHTLAWRNSWDIPDLTKETEAAL
HHCCCCEEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHH
LEKDAGKRADMYKDLQQKILDTSPFVIIHQQLEVAGLRKNLKGFALGPSFDSNFVGPVSK
HHHCCCCHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCCEEECCCCCCCCCCCCCC
E
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]