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The map label for this gene is soxS [C]

Identifier: 13474103

GI number: 13474103

Start: 3896761

End: 3897678

Strand: Direct

Name: soxS [C]

Synonym: mlr4907

Alternate gene names: 13474103

Gene position: 3896761-3897678 (Clockwise)

Preceding gene: 13474101

Following gene: 13474104

Centisome position: 55.38

GC content: 63.07

Gene sequence:

>918_bases
ATGCAGTTCAGGCAGCGAAAAAACACGGCCGCGATCCCGCGCACCGCGCCGGCCTTCGAACATATCGTCACCGAGGCCAG
CGACAGTTTCCTGTGGCGGCTGGATGACTATCCCTGGGAACGCAATGTCTGGAACTTCCATCCGGAATACGAAATCCATC
TGCTGCGGAAATCCTCCGGCGTGGTCCTGGTCGGCGATCACATCGGCGAATTCGGTCCGGGCTACCTGACCATCGTCGGT
GGCGGCCTGCCGCATGATTGGGTAACGGCGGTGCGGCCGGGCGAGCTGATCGAAGGCCGCGACATCGTCCTGCAATTCGA
TGCGCAGAGGCTGCGCGGCTCGGCGGGCCTGCTGCCGGAACTGCGCGAGCTGGAGCCGTTCCTCGAGCGATCGCTGCGCG
GCATGGTCTTCCATGGCCGTACGGCGCTGGAGGGCGCCGGACTGATGGAGCGGATGGGAACCGTGCATGGGCTCGCGCGG
CTCTGCCTGTTCCTCGAACTGGTCGACCTCCTGGCCAGGACCGACGAATACGAGCTCTTGTCGTCGCCGGATTTCTCGCC
GGTTCTCGACGCCGCCTCGCTCGACATCATCCAGCGCACGCTGACCTATCTGTTCCAGCATTTCGCCGAGGATCTGAAGC
TGCCCGACGTTGCCGAACGCGCCGGAATGAGCGAGAGCACATTCTCGCGCTTCTTCCAGAAGAACACCGGCAACTCCTTC
AGCGACCACCTCGCCAAGCTCCGGCTGTGGCAGGCCTGCAAGCTCCTGGCCGACACCGATGTCGCGATCACCGACATCTG
TTTCCAGGTCGGCTACATGAACATCTCCAACTTCAACCGAGCCTTCCTGCGCAAGCACAAGATGACGCCGTCCTCTTATC
GCAAGCTGTCGCGCCAGCGCCTGACGATGCGCGCATAA

Upstream 100 bases:

>100_bases
AGCGCCGTTCTGGGGGCCGTAGCCTCGTTCCCTTGCCGGCAATGGGCTGCTACGGACTGCCGTGGAGACCGGCAGCCAGC
GAACCCGCCGGGAGGAATGG

Downstream 100 bases:

>100_bases
GCACAGCCTAAAATCAGCGGCTTTCACGCGATCGATACTCATGTGACGGAGTTCGTTGCGGAGCACCGAATTTTGCGCTG
CACAATGCATAAAAGTACAG

Product: AraC/XylS family transcriptional regulator

Products: NA

Alternate protein names: AraC Family Transcriptional Regulator; Transcriptional Regulator; Two Component Transcriptional Regulator AraC Family; Helix-Turn-Helix Domain-Containing Protein; Helix-Turn-Helix- Domain Containing Protein AraC Type; Two Component Transcriptional Regulator; Activator Protein MtlR; Transcriptional Regulator Arac Family; Two-Component Response Regulator; AraC Family Regulatory Protein; Transcriptional Regulator AraC Family Protein; Transcriptional Regulator Protein; Response Regulator Receiver Protein; Transcriptional Regulator MtlR; Activator Protein; Transcriptional Activator MltR; AraC/XylS Family Transcriptional Regulator; Transcriptional Regulatory Protein; AraC Family Transcription Regulator; Helix-Turn-Helix AraC Type; AraC Family Transcription Regulator Protein; L-Rhamnose Operon Transcriptional Activator; AraC Family Two Component Transcriptional Regulator; Response Regulator; Transcriptional Activator; Transcriptional Regulator AraC/XylS Family; Methylphosphotriester-DNA Alkyltransferase; Two-Component System Response Regulator YesN; Helix-Turn-Helix Domain-Containing Protein AraC Type; Transcriptional Regulator Protein AraC Family; Helix-Turn-Helix Protein; Adenosine Deaminase; Two Component AraC Family Transcriptional Regulator

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MQFRQRKNTAAIPRTAPAFEHIVTEASDSFLWRLDDYPWERNVWNFHPEYEIHLLRKSSGVVLVGDHIGEFGPGYLTIVG
GGLPHDWVTAVRPGELIEGRDIVLQFDAQRLRGSAGLLPELRELEPFLERSLRGMVFHGRTALEGAGLMERMGTVHGLAR
LCLFLELVDLLARTDEYELLSSPDFSPVLDAASLDIIQRTLTYLFQHFAEDLKLPDVAERAGMSESTFSRFFQKNTGNSF
SDHLAKLRLWQACKLLADTDVAITDICFQVGYMNISNFNRAFLRKHKMTPSSYRKLSRQRLTMRA

Sequences:

>Translated_305_residues
MQFRQRKNTAAIPRTAPAFEHIVTEASDSFLWRLDDYPWERNVWNFHPEYEIHLLRKSSGVVLVGDHIGEFGPGYLTIVG
GGLPHDWVTAVRPGELIEGRDIVLQFDAQRLRGSAGLLPELRELEPFLERSLRGMVFHGRTALEGAGLMERMGTVHGLAR
LCLFLELVDLLARTDEYELLSSPDFSPVLDAASLDIIQRTLTYLFQHFAEDLKLPDVAERAGMSESTFSRFFQKNTGNSF
SDHLAKLRLWQACKLLADTDVAITDICFQVGYMNISNFNRAFLRKHKMTPSSYRKLSRQRLTMRA
>Mature_305_residues
MQFRQRKNTAAIPRTAPAFEHIVTEASDSFLWRLDDYPWERNVWNFHPEYEIHLLRKSSGVVLVGDHIGEFGPGYLTIVG
GGLPHDWVTAVRPGELIEGRDIVLQFDAQRLRGSAGLLPELRELEPFLERSLRGMVFHGRTALEGAGLMERMGTVHGLAR
LCLFLELVDLLARTDEYELLSSPDFSPVLDAASLDIIQRTLTYLFQHFAEDLKLPDVAERAGMSESTFSRFFQKNTGNSF
SDHLAKLRLWQACKLLADTDVAITDICFQVGYMNISNFNRAFLRKHKMTPSSYRKLSRQRLTMRA

Specific function: Transcriptional Activator Of The Superoxide Response Regulon Of E.Coli That Includes At Least 10 Genes Such As Soda, Nfo, Zwf And Micf. Binds The DNA Sequence 5'-Gcacn(7)Caa-3'. It Also Facilitates The Subsequent Binding Of RNA Polymerase To The Micf And

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 2500 (L-broth) [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34788; Mature: 34788

Theoretical pI: Translated: 7.07; Mature: 7.07

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQFRQRKNTAAIPRTAPAFEHIVTEASDSFLWRLDDYPWERNVWNFHPEYEIHLLRKSSG
CCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCEEEEEEECCCC
VVLVGDHIGEFGPGYLTIVGGGLPHDWVTAVRPGELIEGRDIVLQFDAQRLRGSAGLLPE
EEEECCCCCCCCCCEEEEEECCCCHHHHHHCCCCCCCCCCEEEEEECHHHHCCCCCCCCC
LRELEPFLERSLRGMVFHGRTALEGAGLMERMGTVHGLARLCLFLELVDLLARTDEYELL
HHHHHHHHHHHHHCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
SSPDFSPVLDAASLDIIQRTLTYLFQHFAEDLKLPDVAERAGMSESTFSRFFQKNTGNSF
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHCCCCCH
SDHLAKLRLWQACKLLADTDVAITDICFQVGYMNISNFNRAFLRKHKMTPSSYRKLSRQR
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHH
LTMRA
HHCCC
>Mature Secondary Structure
MQFRQRKNTAAIPRTAPAFEHIVTEASDSFLWRLDDYPWERNVWNFHPEYEIHLLRKSSG
CCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCEEEEEEECCCC
VVLVGDHIGEFGPGYLTIVGGGLPHDWVTAVRPGELIEGRDIVLQFDAQRLRGSAGLLPE
EEEECCCCCCCCCCEEEEEECCCCHHHHHHCCCCCCCCCCEEEEEECHHHHCCCCCCCCC
LRELEPFLERSLRGMVFHGRTALEGAGLMERMGTVHGLARLCLFLELVDLLARTDEYELL
HHHHHHHHHHHHHCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
SSPDFSPVLDAASLDIIQRTLTYLFQHFAEDLKLPDVAERAGMSESTFSRFFQKNTGNSF
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHCCCCCH
SDHLAKLRLWQACKLLADTDVAITDICFQVGYMNISNFNRAFLRKHKMTPSSYRKLSRQR
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHH
LTMRA
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA