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The map label for this gene is ycaN [H]

Identifier: 13472703

GI number: 13472703

Start: 2482428

End: 2483315

Strand: Direct

Name: ycaN [H]

Synonym: mlr3082

Alternate gene names: 13472703

Gene position: 2482428-2483315 (Clockwise)

Preceding gene: 13472701

Following gene: 13472712

Centisome position: 35.28

GC content: 61.49

Gene sequence:

>888_bases
ATGCACGGAACCGAGCTTGCCGAGTTGTCGACCTTCCTGGCTGTCGCCCGCCACAGGAGCTTCAAGCAGGCCGCGGTCGA
GCGGGGCGTGGCGGCTTCGGCGATCAGCCACACGATCCGTAGCCTGGAGGAACGCGTCGGCGTGCGGCTGTTCCATCGCA
CCACACGCAGCGTATCGCTGACCGAAGCGGGCGCACGATTTCTCTCAGAGCTGCATCCCGCCTTTGGCCAGATCGAAAAA
GCGCTCGACAGTCTCAATTCCTTCCGGGGTACGCCGTTCGGCACGGTTCGGATCAACGTCCCCAACTCGATCGCACCCTT
TGTCCTGCATGACGTGATGGGACCATTGCTCAAACAGAATCCGGGCCTCCACCTCGACATTGTGGCAACGGACAGGCTGG
TCGACATCGTCGAGGGCGGCTTCGACGCTGGTATCCGCTTTGGCGAGCGGCTGATGCAGGACATGATCGCCGTTCACATC
AAGCCGACCCTGCGCTTCTCGGTCGTCGGCTCCCCCGATTACCTTGCCGGGCGCAAGACACCAGTCATGCCCGCCGACCT
GCGCGAACACGCTTGCATTCGGTATCGCTATCCGAGCGGCGCTATCTACAACTGGCAGTTTGAGAAGAATGGCGAGGCTG
TTGATGTTGAAGTCAATGGCCCCGTCACTCTCGATGACCAGGAACTGATGGTCGAGGCCGCGCTACAAGGCTGTGGCCTT
GCCTATGTCTGGGACAACCGGGTGATGCGTCACTTGGCAAGCGGCGCGCTAATCCGCTGCCTGGATGATTGGTGTGCCCC
GGACGATGGCTTGTTTCTCTATTACCCCAGCCGGCGGTATCTCTCAGCCGGCCTGCGCGCCCTGATCGATATGCTCAAGA
CCGGCTAG

Upstream 100 bases:

>100_bases
TGCCGGTCCTCGTCATCTAAGCGGTCCGGATAGTGATGATTAGTCGATGAATTTTAACTAGAGTAGTGAATGTAAGATAT
TAATTGGGGCACACTGCATC

Downstream 100 bases:

>100_bases
CTAGCGTAGCGGATTTGGAGTTCCTGCTCTATCGCGCCTATCCAACGTTGGGTGCGCGAGGCGATCGAGCAGGCCTCGAT
CATCCGGGCGCGCCCGGCGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MHGTELAELSTFLAVARHRSFKQAAVERGVAASAISHTIRSLEERVGVRLFHRTTRSVSLTEAGARFLSELHPAFGQIEK
ALDSLNSFRGTPFGTVRINVPNSIAPFVLHDVMGPLLKQNPGLHLDIVATDRLVDIVEGGFDAGIRFGERLMQDMIAVHI
KPTLRFSVVGSPDYLAGRKTPVMPADLREHACIRYRYPSGAIYNWQFEKNGEAVDVEVNGPVTLDDQELMVEAALQGCGL
AYVWDNRVMRHLASGALIRCLDDWCAPDDGLFLYYPSRRYLSAGLRALIDMLKTG

Sequences:

>Translated_295_residues
MHGTELAELSTFLAVARHRSFKQAAVERGVAASAISHTIRSLEERVGVRLFHRTTRSVSLTEAGARFLSELHPAFGQIEK
ALDSLNSFRGTPFGTVRINVPNSIAPFVLHDVMGPLLKQNPGLHLDIVATDRLVDIVEGGFDAGIRFGERLMQDMIAVHI
KPTLRFSVVGSPDYLAGRKTPVMPADLREHACIRYRYPSGAIYNWQFEKNGEAVDVEVNGPVTLDDQELMVEAALQGCGL
AYVWDNRVMRHLASGALIRCLDDWCAPDDGLFLYYPSRRYLSAGLRALIDMLKTG
>Mature_295_residues
MHGTELAELSTFLAVARHRSFKQAAVERGVAASAISHTIRSLEERVGVRLFHRTTRSVSLTEAGARFLSELHPAFGQIEK
ALDSLNSFRGTPFGTVRINVPNSIAPFVLHDVMGPLLKQNPGLHLDIVATDRLVDIVEGGFDAGIRFGERLMQDMIAVHI
KPTLRFSVVGSPDYLAGRKTPVMPADLREHACIRYRYPSGAIYNWQFEKNGEAVDVEVNGPVTLDDQELMVEAALQGCGL
AYVWDNRVMRHLASGALIRCLDDWCAPDDGLFLYYPSRRYLSAGLRALIDMLKTG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787128, Length=290, Percent_Identity=42.4137931034483, Blast_Score=254, Evalue=5e-69,
Organism=Escherichia coli, GI1787589, Length=294, Percent_Identity=38.4353741496599, Blast_Score=201, Evalue=5e-53,
Organism=Escherichia coli, GI1786401, Length=291, Percent_Identity=30.2405498281787, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI87081978, Length=290, Percent_Identity=30, Blast_Score=117, Evalue=8e-28,
Organism=Escherichia coli, GI145693193, Length=280, Percent_Identity=32.1428571428571, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI1789639, Length=290, Percent_Identity=26.551724137931, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1789440, Length=285, Percent_Identity=23.5087719298246, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI1789173, Length=274, Percent_Identity=26.2773722627737, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1788706, Length=271, Percent_Identity=26.5682656826568, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1786448, Length=290, Percent_Identity=26.8965517241379, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1790783, Length=269, Percent_Identity=26.0223048327138, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787879, Length=146, Percent_Identity=30.1369863013699, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790011, Length=267, Percent_Identity=21.7228464419476, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788748, Length=145, Percent_Identity=29.6551724137931, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32661; Mature: 32661

Theoretical pI: Translated: 7.06; Mature: 7.06

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHGTELAELSTFLAVARHRSFKQAAVERGVAASAISHTIRSLEERVGVRLFHRTTRSVSL
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEH
TEAGARFLSELHPAFGQIEKALDSLNSFRGTPFGTVRINVPNSIAPFVLHDVMGPLLKQN
HHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCC
PGLHLDIVATDRLVDIVEGGFDAGIRFGERLMQDMIAVHIKPTLRFSVVGSPDYLAGRKT
CCCEEEEEEHHHHHHHHHCCHHHHHHHHHHHHHHHHHEEECCCEEEEEECCCCCCCCCCC
PVMPADLREHACIRYRYPSGAIYNWQFEKNGEAVDVEVNGPVTLDDQELMVEAALQGCGL
CCCCCCHHCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCEEECHHHHHHHHHHHHCCE
AYVWDNRVMRHLASGALIRCLDDWCAPDDGLFLYYPSRRYLSAGLRALIDMLKTG
EEEHHHHHHHHHHCCHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MHGTELAELSTFLAVARHRSFKQAAVERGVAASAISHTIRSLEERVGVRLFHRTTRSVSL
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEH
TEAGARFLSELHPAFGQIEKALDSLNSFRGTPFGTVRINVPNSIAPFVLHDVMGPLLKQN
HHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCC
PGLHLDIVATDRLVDIVEGGFDAGIRFGERLMQDMIAVHIKPTLRFSVVGSPDYLAGRKT
CCCEEEEEEHHHHHHHHHCCHHHHHHHHHHHHHHHHHEEECCCEEEEEECCCCCCCCCCC
PVMPADLREHACIRYRYPSGAIYNWQFEKNGEAVDVEVNGPVTLDDQELMVEAALQGCGL
CCCCCCHHCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCEEECHHHHHHHHHHHHCCE
AYVWDNRVMRHLASGALIRCLDDWCAPDDGLFLYYPSRRYLSAGLRALIDMLKTG
EEEHHHHHHHHHHCCHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]