| Definition | Mesorhizobium loti MAFF303099 chromosome, complete genome. |
|---|---|
| Accession | NC_002678 |
| Length | 7,036,071 |
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The map label for this gene is yqjQ [H]
Identifier: 13472269
GI number: 13472269
Start: 2034913
End: 2035707
Strand: Reverse
Name: yqjQ [H]
Synonym: mll2507
Alternate gene names: 13472269
Gene position: 2035707-2034913 (Counterclockwise)
Preceding gene: 13472271
Following gene: 13472267
Centisome position: 28.93
GC content: 66.16
Gene sequence:
>795_bases ATGAGTGGACAGGCAAACAAGGGCACGGCGGTCGTCACCGGCGCGTCGTCTGGCATCGGCGCGATCTATGCGGACAGGCT GGCAGGGCAGGGCTATGATCTCGTGCTGGTAGCGCGGCGCGCCGACCGGCTCGAGGAACTGGCCGAGAAGCTGCGTTACG CCTACGACCGCAAGGTCAGCGTGATCAGCGCCGATCTCTCCGACGACGATGATGTGCGCCGCGTCGAGCAGGCGATATCG GCCGACGACAGCGTGACGCTGCTGGTCAACAATGCCGGCCTTGGCGGCCAGCAGGTGGTGGCAACGGCCGACGCCGACGC GGCCGAACGCATGATCAAGGTCAATGTCATCGCCTTGACCCGTTTGACCCGTGCGGTGCTGCCGGGTCTTCTGGCGCGCA ACCGCGGCGCCATCGTCAACATCGCCTCGGTGCTCGCCTATGAAACCTCGTTCGGCGGCATCTACAGCGGCACCAAGGCC TATGTCGTCAACTTCACCGAGGCGCTGCACCGCGAGGTGGCGGGTACTGGCGTGAAGGTGCAGGTGGTGCTTCCCGGCGC GACCCGGACCGATTTCTGGGAACTGGCCGGCAGCGATATCGACCAGCTTCCGAAGGAAATCATCATGTCCGCCGACGATA TGGTCGATGCCGCGCTTGTCGGCCTGGCCAGGGGCGAAGCCGTCACCGTGCCGGCACTTGCCGATGCCGCCAAGCTGGAC ACCTTCCTCGGCGCCCGCCAGGCCTTTTACGGCAGCCTGCACGCCGACAAGCCGGCGGCGCGTTACGCGGCTTGA
Upstream 100 bases:
>100_bases ATGCCACTAACTCAATCAGGCGGCGCGCCGGCGAGCCGAGGCGAATGCCTGCGGCGACGGCTGCCAGTTCGAAGCGAACA GAGACAGAAGGAACAGGACA
Downstream 100 bases:
>100_bases GGGTCAAGGGCTGGTTCGCGTTGCGACCAGCACCCCCACCCCGACCCTCCACAAGGGGAGGGTGAGGAAGCGCCTTGTCC GCCCATGCGACAATACTCTT
Product: short-chain dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 264; Mature: 263
Protein sequence:
>264_residues MSGQANKGTAVVTGASSGIGAIYADRLAGQGYDLVLVARRADRLEELAEKLRYAYDRKVSVISADLSDDDDVRRVEQAIS ADDSVTLLVNNAGLGGQQVVATADADAAERMIKVNVIALTRLTRAVLPGLLARNRGAIVNIASVLAYETSFGGIYSGTKA YVVNFTEALHREVAGTGVKVQVVLPGATRTDFWELAGSDIDQLPKEIIMSADDMVDAALVGLARGEAVTVPALADAAKLD TFLGARQAFYGSLHADKPAARYAA
Sequences:
>Translated_264_residues MSGQANKGTAVVTGASSGIGAIYADRLAGQGYDLVLVARRADRLEELAEKLRYAYDRKVSVISADLSDDDDVRRVEQAIS ADDSVTLLVNNAGLGGQQVVATADADAAERMIKVNVIALTRLTRAVLPGLLARNRGAIVNIASVLAYETSFGGIYSGTKA YVVNFTEALHREVAGTGVKVQVVLPGATRTDFWELAGSDIDQLPKEIIMSADDMVDAALVGLARGEAVTVPALADAAKLD TFLGARQAFYGSLHADKPAARYAA >Mature_263_residues SGQANKGTAVVTGASSGIGAIYADRLAGQGYDLVLVARRADRLEELAEKLRYAYDRKVSVISADLSDDDDVRRVEQAISA DDSVTLLVNNAGLGGQQVVATADADAAERMIKVNVIALTRLTRAVLPGLLARNRGAIVNIASVLAYETSFGGIYSGTKAY VVNFTEALHREVAGTGVKVQVVLPGATRTDFWELAGSDIDQLPKEIIMSADDMVDAALVGLARGEAVTVPALADAAKLDT FLGARQAFYGSLHADKPAARYAA
Specific function: Unknown
COG id: COG0300
COG function: function code R; Short-chain dehydrogenases of various substrate specificities
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI7705855, Length=210, Percent_Identity=31.4285714285714, Blast_Score=113, Evalue=2e-25, Organism=Homo sapiens, GI4557649, Length=213, Percent_Identity=29.1079812206573, Blast_Score=103, Evalue=1e-22, Organism=Homo sapiens, GI226371731, Length=179, Percent_Identity=33.5195530726257, Blast_Score=99, Evalue=5e-21, Organism=Homo sapiens, GI109715829, Length=192, Percent_Identity=34.8958333333333, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI7706318, Length=189, Percent_Identity=29.6296296296296, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI19743808, Length=183, Percent_Identity=32.2404371584699, Blast_Score=78, Evalue=6e-15, Organism=Homo sapiens, GI20149619, Length=189, Percent_Identity=29.6296296296296, Blast_Score=78, Evalue=1e-14, Organism=Homo sapiens, GI142976729, Length=192, Percent_Identity=33.3333333333333, Blast_Score=75, Evalue=5e-14, Organism=Homo sapiens, GI7657478, Length=209, Percent_Identity=28.7081339712919, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI150247226, Length=187, Percent_Identity=30.4812834224599, Blast_Score=72, Evalue=7e-13, Organism=Homo sapiens, GI40548397, Length=210, Percent_Identity=26.6666666666667, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI214010158, Length=210, Percent_Identity=26.6666666666667, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI214010156, Length=210, Percent_Identity=26.6666666666667, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI22758144, Length=210, Percent_Identity=26.6666666666667, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI22507405, Length=196, Percent_Identity=28.0612244897959, Blast_Score=68, Evalue=7e-12, Organism=Homo sapiens, GI5031737, Length=191, Percent_Identity=29.3193717277487, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI33667109, Length=192, Percent_Identity=28.6458333333333, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI4503817, Length=186, Percent_Identity=32.7956989247312, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI40254992, Length=185, Percent_Identity=27.027027027027, Blast_Score=66, Evalue=3e-11, Organism=Escherichia coli, GI1787820, Length=179, Percent_Identity=33.5195530726257, Blast_Score=97, Evalue=8e-22, Organism=Escherichia coli, GI1786701, Length=195, Percent_Identity=27.6923076923077, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI87082100, Length=195, Percent_Identity=31.2820512820513, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1787335, Length=185, Percent_Identity=30.2702702702703, Blast_Score=73, Evalue=1e-14, Organism=Escherichia coli, GI1789378, Length=213, Percent_Identity=29.5774647887324, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI2367175, Length=209, Percent_Identity=31.1004784688995, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI87082160, Length=187, Percent_Identity=29.4117647058824, Blast_Score=61, Evalue=8e-11, Organism=Caenorhabditis elegans, GI71994604, Length=195, Percent_Identity=33.8461538461538, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI71994600, Length=198, Percent_Identity=32.8282828282828, Blast_Score=84, Evalue=9e-17, Organism=Caenorhabditis elegans, GI17560176, Length=190, Percent_Identity=30.5263157894737, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17557668, Length=198, Percent_Identity=29.7979797979798, Blast_Score=78, Evalue=6e-15, Organism=Caenorhabditis elegans, GI25152911, Length=197, Percent_Identity=29.4416243654822, Blast_Score=77, Evalue=7e-15, Organism=Caenorhabditis elegans, GI212646214, Length=207, Percent_Identity=26.5700483091787, Blast_Score=77, Evalue=7e-15, Organism=Caenorhabditis elegans, GI17559552, Length=198, Percent_Identity=29.7979797979798, Blast_Score=77, Evalue=9e-15, Organism=Caenorhabditis elegans, GI25147288, Length=188, Percent_Identity=28.1914893617021, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17562904, Length=202, Percent_Identity=27.7227722772277, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17508895, Length=199, Percent_Identity=29.1457286432161, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17561402, Length=185, Percent_Identity=29.7297297297297, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17555706, Length=193, Percent_Identity=29.0155440414508, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17551412, Length=203, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17560150, Length=259, Percent_Identity=25.8687258687259, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17538480, Length=204, Percent_Identity=29.4117647058824, Blast_Score=69, Evalue=4e-12, Organism=Caenorhabditis elegans, GI193203117, Length=226, Percent_Identity=29.646017699115, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17560332, Length=249, Percent_Identity=28.9156626506024, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI193203115, Length=218, Percent_Identity=29.3577981651376, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17562910, Length=248, Percent_Identity=25.4032258064516, Blast_Score=64, Evalue=6e-11, Organism=Caenorhabditis elegans, GI17560220, Length=197, Percent_Identity=25.3807106598985, Blast_Score=64, Evalue=8e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=196, Percent_Identity=36.2244897959184, Blast_Score=95, Evalue=1e-20, Organism=Saccharomyces cerevisiae, GI6322067, Length=191, Percent_Identity=31.9371727748691, Blast_Score=72, Evalue=7e-14, Organism=Saccharomyces cerevisiae, GI6319635, Length=193, Percent_Identity=26.4248704663212, Blast_Score=70, Evalue=2e-13, Organism=Drosophila melanogaster, GI161076933, Length=186, Percent_Identity=36.0215053763441, Blast_Score=105, Evalue=3e-23, Organism=Drosophila melanogaster, GI24584748, Length=186, Percent_Identity=36.0215053763441, Blast_Score=104, Evalue=5e-23, Organism=Drosophila melanogaster, GI28574402, Length=186, Percent_Identity=34.4086021505376, Blast_Score=100, Evalue=7e-22, Organism=Drosophila melanogaster, GI24584744, Length=186, Percent_Identity=34.4086021505376, Blast_Score=100, Evalue=7e-22, Organism=Drosophila melanogaster, GI24640442, Length=188, Percent_Identity=31.9148936170213, Blast_Score=95, Evalue=5e-20, Organism=Drosophila melanogaster, GI116007236, Length=242, Percent_Identity=32.2314049586777, Blast_Score=91, Evalue=8e-19, Organism=Drosophila melanogaster, GI21357041, Length=192, Percent_Identity=35.9375, Blast_Score=90, Evalue=2e-18, Organism=Drosophila melanogaster, GI28571526, Length=192, Percent_Identity=34.8958333333333, Blast_Score=89, Evalue=2e-18, Organism=Drosophila melanogaster, GI23397609, Length=188, Percent_Identity=34.5744680851064, Blast_Score=86, Evalue=2e-17, Organism=Drosophila melanogaster, GI24644339, Length=198, Percent_Identity=30.8080808080808, Blast_Score=86, Evalue=2e-17, Organism=Drosophila melanogaster, GI24584752, Length=180, Percent_Identity=30.5555555555556, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI116007238, Length=185, Percent_Identity=33.5135135135135, Blast_Score=82, Evalue=4e-16, Organism=Drosophila melanogaster, GI21358495, Length=188, Percent_Identity=30.3191489361702, Blast_Score=75, Evalue=5e-14, Organism=Drosophila melanogaster, GI21355319, Length=189, Percent_Identity=29.1005291005291, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI24649181, Length=238, Percent_Identity=26.0504201680672, Blast_Score=71, Evalue=7e-13, Organism=Drosophila melanogaster, GI24648944, Length=230, Percent_Identity=27.3913043478261, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI281364494, Length=230, Percent_Identity=29.1304347826087, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI24641232, Length=236, Percent_Identity=26.271186440678, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI116007234, Length=198, Percent_Identity=30.8080808080808, Blast_Score=69, Evalue=5e-12, Organism=Drosophila melanogaster, GI24641388, Length=225, Percent_Identity=31.1111111111111, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24648693, Length=238, Percent_Identity=28.9915966386555, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI21355889, Length=238, Percent_Identity=28.9915966386555, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24663911, Length=256, Percent_Identity=27.734375, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24665247, Length=192, Percent_Identity=31.7708333333333, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI221331216, Length=193, Percent_Identity=31.6062176165803, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI24643142, Length=217, Percent_Identity=29.4930875576037, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI28571387, Length=237, Percent_Identity=28.6919831223629, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI17737361, Length=201, Percent_Identity=29.3532338308458, Blast_Score=65, Evalue=6e-11,
Paralogues:
None
Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 27727; Mature: 27595
Theoretical pI: Translated: 4.84; Mature: 4.84
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGQANKGTAVVTGASSGIGAIYADRLAGQGYDLVLVARRADRLEELAEKLRYAYDRKVS CCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCEE VISADLSDDDDVRRVEQAISADDSVTLLVNNAGLGGQQVVATADADAAERMIKVNVIALT EEEECCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHH RLTRAVLPGLLARNRGAIVNIASVLAYETSFGGIYSGTKAYVVNFTEALHREVAGTGVKV HHHHHHHHHHHHCCCCCEEEHHHHHHHHCCCCCCCCCCEEEEEEHHHHHHHHHCCCCEEE QVVLPGATRTDFWELAGSDIDQLPKEIIMSADDMVDAALVGLARGEAVTVPALADAAKLD EEEECCCCCCHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCEEEECHHHHHHHHH TFLGARQAFYGSLHADKPAARYAA HHHHHHHHHHCCCCCCCCHHHCCC >Mature Secondary Structure SGQANKGTAVVTGASSGIGAIYADRLAGQGYDLVLVARRADRLEELAEKLRYAYDRKVS CCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCEE VISADLSDDDDVRRVEQAISADDSVTLLVNNAGLGGQQVVATADADAAERMIKVNVIALT EEEECCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHH RLTRAVLPGLLARNRGAIVNIASVLAYETSFGGIYSGTKAYVVNFTEALHREVAGTGVKV HHHHHHHHHHHHCCCCCEEEHHHHHHHHCCCCCCCCCCEEEEEEHHHHHHHHHCCCCEEE QVVLPGATRTDFWELAGSDIDQLPKEIIMSADDMVDAALVGLARGEAVTVPALADAAKLD EEEECCCCCCHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCEEEECHHHHHHHHH TFLGARQAFYGSLHADKPAARYAA HHHHHHHHHHCCCCCCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8969508; 9384377 [H]