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The map label for this gene is rplU [H]

Identifier: 13471401

GI number: 13471401

Start: 1141449

End: 1142063

Strand: Reverse

Name: rplU [H]

Synonym: mll1364

Alternate gene names: 13471401

Gene position: 1142063-1141449 (Counterclockwise)

Preceding gene: 13471402

Following gene: 13471400

Centisome position: 16.23

GC content: 65.69

Gene sequence:

>615_bases
ATGCCGAAGGAGATGGCCAGCGCCATCAACCTTTTCGTGCACCCTGTCGCGGGCGCGGCGGCGATGTCGGCGCTCGGCAT
CGGGTTCGCTAATCACGCCTTCGGCGTCTGGCTGGGGGCACTCACAGGAGCCGCCGAGGCATCACAGCGCCTGATGCAGC
CGCTGATCGAGGATTTCGAGGCTCGCGTCGAACAATTCGAGGACGCGAACTCGTCGTCCATCAAGGCGCGGGCGACGGCC
AAGACCATGATTGCCGAGGCGCAGTCCTTCGCGCAGGAGGTCACCGATATCGCCGCCAAGGAAGCCGCCACCACGGCACC
GGCGGTGAATGCGGCTCCGGCAGCCGGCGAGGCCGCCGATGTGCTGCTGCCCGAGGATTTCAGGCAGCCCAAGGCTATGG
ACAAGCCGGCGAAACCGTCCGACCTCAAGGCGATTTCGGGCATCGGCCCGAAGCTGGAAAAGGTGCTGAACGGGCTTGGC
ATCTGGACCTATGCCCAGATCGCCGCCTGGTCGCCGCAGGAGATCGCCTGGGTCGACGATTATCTGTCGTTCAACGGCCG
CATCGGCCGTGACGACTGGACTGCCCAGGCGGCTGTGCTGGCCGCGAAGAAGTGA

Upstream 100 bases:

>100_bases
AAACGACCGGGAGAATTCTATGGCGCCGTATTCGACACCCTATCCATTGATGCCCAATTTGGACCAGATCGAAAAGATGA
ACCAGGACCTGACCAGGATG

Downstream 100 bases:

>100_bases
ATGAAATGCCGGGTGCCGCGTCTGTCGCGCCCGGGAAATGAGATTGCGGGAAATCCGCAGGGGTTTGAAGCGAATGGCAA
AGCTCAAGGTCGACGGGAAA

Product: NADH-ubiquinone dehydrogenase subunit

Products: NAD+; ubiquinol

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 203

Protein sequence:

>204_residues
MPKEMASAINLFVHPVAGAAAMSALGIGFANHAFGVWLGALTGAAEASQRLMQPLIEDFEARVEQFEDANSSSIKARATA
KTMIAEAQSFAQEVTDIAAKEAATTAPAVNAAPAAGEAADVLLPEDFRQPKAMDKPAKPSDLKAISGIGPKLEKVLNGLG
IWTYAQIAAWSPQEIAWVDDYLSFNGRIGRDDWTAQAAVLAAKK

Sequences:

>Translated_204_residues
MPKEMASAINLFVHPVAGAAAMSALGIGFANHAFGVWLGALTGAAEASQRLMQPLIEDFEARVEQFEDANSSSIKARATA
KTMIAEAQSFAQEVTDIAAKEAATTAPAVNAAPAAGEAADVLLPEDFRQPKAMDKPAKPSDLKAISGIGPKLEKVLNGLG
IWTYAQIAAWSPQEIAWVDDYLSFNGRIGRDDWTAQAAVLAAKK
>Mature_203_residues
PKEMASAINLFVHPVAGAAAMSALGIGFANHAFGVWLGALTGAAEASQRLMQPLIEDFEARVEQFEDANSSSIKARATAK
TMIAEAQSFAQEVTDIAAKEAATTAPAVNAAPAAGEAADVLLPEDFRQPKAMDKPAKPSDLKAISGIGPKLEKVLNGLGI
WTYAQIAAWSPQEIAWVDDYLSFNGRIGRDDWTAQAAVLAAKK

Specific function: This protein binds to 23S rRNA in the presence of protein L20 [H]

COG id: COG3743

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L21P family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001787 [H]

Pfam domain/function: PF00829 Ribosomal_L21p [H]

EC number: 1.6.5.3

Molecular weight: Translated: 21481; Mature: 21349

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKEMASAINLFVHPVAGAAAMSALGIGFANHAFGVWLGALTGAAEASQRLMQPLIEDFE
CCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARVEQFEDANSSSIKARATAKTMIAEAQSFAQEVTDIAAKEAATTAPAVNAAPAAGEAAD
HHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
VLLPEDFRQPKAMDKPAKPSDLKAISGIGPKLEKVLNGLGIWTYAQIAAWSPQEIAWVDD
CCCCHHHCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHH
YLSFNGRIGRDDWTAQAAVLAAKK
HHHCCCCCCCCCHHHHHHHHHCCC
>Mature Secondary Structure 
PKEMASAINLFVHPVAGAAAMSALGIGFANHAFGVWLGALTGAAEASQRLMQPLIEDFE
CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARVEQFEDANSSSIKARATAKTMIAEAQSFAQEVTDIAAKEAATTAPAVNAAPAAGEAAD
HHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
VLLPEDFRQPKAMDKPAKPSDLKAISGIGPKLEKVLNGLGIWTYAQIAAWSPQEIAWVDD
CCCCHHHCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHH
YLSFNGRIGRDDWTAQAAVLAAKK
HHHCCCCCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NADH; H+; ubiquinone

Specific reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA