Click here to switch to the map view.

The map label for this gene is clpS

Identifier: 13470855

GI number: 13470855

Start: 521982

End: 522311

Strand: Reverse

Name: clpS

Synonym: mll0664

Alternate gene names: 13470855

Gene position: 522311-521982 (Counterclockwise)

Preceding gene: 13470856

Following gene: 13470854

Centisome position: 7.42

GC content: 57.27

Gene sequence:

>330_bases
ATGCAAAACGGCGGCGGCGACGGCAATGAGGCCGGCCGCGGGACGGCCGTTATCACGCGCACCAAAACCAAGACCAAGAA
GCCCAGCCTTTACCGGGTCCTCATCCTCAACGACGACTACACTCCCATGGAGTTCGTGGTTCACGTGCTGGAGCGTTTTT
TCCAGAAGGACCGCGAAGCCGCCACACGCATCATGCTTCATGTTCACAATCATGGAGTGGGCGAGTGCGGGGTCTATACA
TTCGAGGTGGCCGAGACCAAAGTGTCTCAGGTCATGGATTTCGCCCGACAGAATCAGCATCCGCTGCAATGCGTGATGGA
GAAGAAGTGA

Upstream 100 bases:

>100_bases
AATCGTCCATCGAACACCTACATGTTGAACTCGCATGGGGATTCGAAAGAGGCAGGATTACGTGACGATCGGTTTGACTG
CCACGAGACAAGTGGCGCGG

Downstream 100 bases:

>100_bases
GGTAACATGCCGGCTTTCTCCCAAGGCCTGGAAAAGGCGCTTCACCAGGCGCTGACGCTCGCCAATGAGCGGCACCATGA
ATACGCAACCCTTGAACATC

Product: ATP-dependent Clp protease adaptor protein ClpS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 109; Mature: 109

Protein sequence:

>109_residues
MQNGGGDGNEAGRGTAVITRTKTKTKKPSLYRVLILNDDYTPMEFVVHVLERFFQKDREAATRIMLHVHNHGVGECGVYT
FEVAETKVSQVMDFARQNQHPLQCVMEKK

Sequences:

>Translated_109_residues
MQNGGGDGNEAGRGTAVITRTKTKTKKPSLYRVLILNDDYTPMEFVVHVLERFFQKDREAATRIMLHVHNHGVGECGVYT
FEVAETKVSQVMDFARQNQHPLQCVMEKK
>Mature_109_residues
MQNGGGDGNEAGRGTAVITRTKTKTKKPSLYRVLILNDDYTPMEFVVHVLERFFQKDREAATRIMLHVHNHGVGECGVYT
FEVAETKVSQVMDFARQNQHPLQCVMEKK

Specific function: Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation

COG id: COG2127

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ClpS family

Homologues:

Organism=Escherichia coli, GI1787108, Length=89, Percent_Identity=55.0561797752809, Blast_Score=112, Evalue=4e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CLPS1_RHILO (Q98MA3)

Other databases:

- EMBL:   BA000012
- RefSeq:   NP_102424.1
- ProteinModelPortal:   Q98MA3
- SMR:   Q98MA3
- GeneID:   1225087
- GenomeReviews:   BA000012_GR
- KEGG:   mlo:mll0664
- NMPDR:   fig|266835.1.peg.529
- HOGENOM:   HBG644923
- OMA:   FVIHILE
- ProtClustDB:   PRK00033
- HAMAP:   MF_00302
- InterPro:   IPR022935
- InterPro:   IPR003769
- InterPro:   IPR014719
- Gene3D:   G3DSA:3.30.1390.10

Pfam domain/function: PF02617 ClpS; SSF54736 Ribosomal_L7/12_C/ClpS-like

EC number: NA

Molecular weight: Translated: 12381; Mature: 12381

Theoretical pI: Translated: 8.73; Mature: 8.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNGGGDGNEAGRGTAVITRTKTKTKKPSLYRVLILNDDYTPMEFVVHVLERFFQKDREA
CCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
ATRIMLHVHNHGVGECGVYTFEVAETKVSQVMDFARQNQHPLQCVMEKK
HHHHHEEECCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCHHEECCC
>Mature Secondary Structure
MQNGGGDGNEAGRGTAVITRTKTKTKKPSLYRVLILNDDYTPMEFVVHVLERFFQKDREA
CCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
ATRIMLHVHNHGVGECGVYTFEVAETKVSQVMDFARQNQHPLQCVMEKK
HHHHHEEECCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCHHEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11214968