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The map label for this gene is yddE [C]

Identifier: 15603368

GI number: 15603368

Start: 1699585

End: 1700454

Strand: Direct

Name: yddE [C]

Synonym: PM1503

Alternate gene names: 15603368

Gene position: 1699585-1700454 (Clockwise)

Preceding gene: 15603367

Following gene: 15603369

Centisome position: 75.29

GC content: 42.18

Gene sequence:

>870_bases
ATGTTAACCCCTTATGCATATCACTTGGTTAATGTGTTTGCCGAAACCTATTTTGGCGGCAATCCGTTAGCGGTTTTTCC
TCAAGCTGATGGACTGACTGATCAACAAATGCAGTTAATTGCACGTCAATTTAACCTATCCGAAACCGTTTTTGTCCATC
AAACAACAGAAAGCAGTGCGGTAAGAAAATTACGTATTTTTACCCCTGATTATGAATTACCTTTTGCAGGACATCCGACA
ATTGGTGCGGCGTTTGTGTTACATCAGCAGTTAAACCTACCCGAAACTTATCTTTTACAAACACAGGCTGGCTTAGTGAA
GTTGTTTCATGAAGCGAAGCAGATTTGCTTTGGTTTACAAAACCATATTGACGTGGAGGTGATTGATGACAATCTTCCTC
AATATACGCAATTATTAGGTTTAAGCGAGTCAGATATTGCTCAAATTGCGTGGATTAATACCGGCAGTCGCCAATTACTG
ATCCAATTGACTTCTCTCAACGCCCTTAAAACTTGCCAAATTCATCCCGCACTTTTTCAGCAAATTGTGAAACAATCTGC
GCTTTATCTTTGGTTTGTAGAACAAAATCAAGCCAATGTGCGACTCTTTTTTGGTTCAAACGGTGCGGTTGTCGAAGATC
CCGGGACAGGTTCAGCGGCTGCAAATTTAGGGGGCTTATGCCTTAAAAACGGCTTAACACCACTCAATTGGCGCATTTAT
CAAGGTGATGAAATCCAACGCCCGAACCGTTTAACCTTACAAGTCGATGAATCTGAAACCATTTATGTGGGCGGTAAAGT
GATTGCGGTAGGATGTGGAGAGTTGTTTGTGCCGAGTGGAGAGGGTGAACCAAGTCAAGGATGTCGTTAA

Upstream 100 bases:

>100_bases
TGTCGCGCACCATTAGTGAGGCTATGCGTAGGTTGAGGTAGTACTACGCCTTATTTATTAAATCATGACCGCATTTTTAT
TCAACTTTTGAGGCTCGATG

Downstream 100 bases:

>100_bases
GCTTGTGTACAGTGAGGAACTCGAAAAAATGAATATTTATTGCTTATTATTTGATGATTACGAAACACTGGACTTAATGG
GACCGATTGAGTTTTTGTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MLTPYAYHLVNVFAETYFGGNPLAVFPQADGLTDQQMQLIARQFNLSETVFVHQTTESSAVRKLRIFTPDYELPFAGHPT
IGAAFVLHQQLNLPETYLLQTQAGLVKLFHEAKQICFGLQNHIDVEVIDDNLPQYTQLLGLSESDIAQIAWINTGSRQLL
IQLTSLNALKTCQIHPALFQQIVKQSALYLWFVEQNQANVRLFFGSNGAVVEDPGTGSAAANLGGLCLKNGLTPLNWRIY
QGDEIQRPNRLTLQVDESETIYVGGKVIAVGCGELFVPSGEGEPSQGCR

Sequences:

>Translated_289_residues
MLTPYAYHLVNVFAETYFGGNPLAVFPQADGLTDQQMQLIARQFNLSETVFVHQTTESSAVRKLRIFTPDYELPFAGHPT
IGAAFVLHQQLNLPETYLLQTQAGLVKLFHEAKQICFGLQNHIDVEVIDDNLPQYTQLLGLSESDIAQIAWINTGSRQLL
IQLTSLNALKTCQIHPALFQQIVKQSALYLWFVEQNQANVRLFFGSNGAVVEDPGTGSAAANLGGLCLKNGLTPLNWRIY
QGDEIQRPNRLTLQVDESETIYVGGKVIAVGCGELFVPSGEGEPSQGCR
>Mature_289_residues
MLTPYAYHLVNVFAETYFGGNPLAVFPQADGLTDQQMQLIARQFNLSETVFVHQTTESSAVRKLRIFTPDYELPFAGHPT
IGAAFVLHQQLNLPETYLLQTQAGLVKLFHEAKQICFGLQNHIDVEVIDDNLPQYTQLLGLSESDIAQIAWINTGSRQLL
IQLTSLNALKTCQIHPALFQQIVKQSALYLWFVEQNQANVRLFFGSNGAVVEDPGTGSAAANLGGLCLKNGLTPLNWRIY
QGDEIQRPNRLTLQVDESETIYVGGKVIAVGCGELFVPSGEGEPSQGCR

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family

Homologues:

Organism=Escherichia coli, GI1787737, Length=290, Percent_Identity=26.8965517241379, Blast_Score=79, Evalue=4e-16,
Organism=Saccharomyces cerevisiae, GI6321818, Length=81, Percent_Identity=48.1481481481481, Blast_Score=72, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1503_PASMU (Q9CKV2)

Other databases:

- EMBL:   AE004439
- RefSeq:   NP_246442.1
- ProteinModelPortal:   Q9CKV2
- GeneID:   1244850
- GenomeReviews:   AE004439_GR
- KEGG:   pmu:PM1503
- NMPDR:   fig|272843.1.peg.1504
- HOGENOM:   HBG563743
- OMA:   DTGADQL
- BioCyc:   PMUL272843:PM1503-MONOMER
- InterPro:   IPR003719
- PANTHER:   PTHR13774
- PIRSF:   PIRSF016184
- TIGRFAMs:   TIGR00654

Pfam domain/function: PF02567 PhzC-PhzF

EC number: NA

Molecular weight: Translated: 31907; Mature: 31907

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: NA

Important sites: ACT_SITE 48-48

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTPYAYHLVNVFAETYFGGNPLAVFPQADGLTDQQMQLIARQFNLSETVFVHQTTESSA
CCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCC
VRKLRIFTPDYELPFAGHPTIGAAFVLHQQLNLPETYLLQTQAGLVKLFHEAKQICFGLQ
EEEEEEECCCCCCCCCCCCCHHHHEEEHHHCCCCHHEEEEHHHHHHHHHHHHHHHHHHHC
NHIDVEVIDDNLPQYTQLLGLSESDIAQIAWINTGSRQLLIQLTSLNALKTCQIHPALFQ
CCCEEEEECCCCHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECCCCEEEEEECHHHHH
QIVKQSALYLWFVEQNQANVRLFFGSNGAVVEDPGTGSAAANLGGLCLKNGLTPLNWRIY
HHHHCCEEEEEEEECCCCEEEEEECCCCCEEECCCCCCHHHCCCCHHHHCCCCCCEEEEE
QGDEIQRPNRLTLQVDESETIYVGGKVIAVGCGELFVPSGEGEPSQGCR
CCCCCCCCCEEEEEECCCCEEEECCEEEEEECCEEEEECCCCCCCCCCC
>Mature Secondary Structure
MLTPYAYHLVNVFAETYFGGNPLAVFPQADGLTDQQMQLIARQFNLSETVFVHQTTESSA
CCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCC
VRKLRIFTPDYELPFAGHPTIGAAFVLHQQLNLPETYLLQTQAGLVKLFHEAKQICFGLQ
EEEEEEECCCCCCCCCCCCCHHHHEEEHHHCCCCHHEEEEHHHHHHHHHHHHHHHHHHHC
NHIDVEVIDDNLPQYTQLLGLSESDIAQIAWINTGSRQLLIQLTSLNALKTCQIHPALFQ
CCCEEEEECCCCHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECCCCEEEEEECHHHHH
QIVKQSALYLWFVEQNQANVRLFFGSNGAVVEDPGTGSAAANLGGLCLKNGLTPLNWRIY
HHHHCCEEEEEEEECCCCEEEEEECCCCCEEECCCCCCHHHCCCCHHHHCCCCCCEEEEE
QGDEIQRPNRLTLQVDESETIYVGGKVIAVGCGELFVPSGEGEPSQGCR
CCCCCCCCCEEEEEECCCCEEEECCEEEEEECCEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100