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The map label for this gene is ypjD [H]

Identifier: 15603049

GI number: 15603049

Start: 1379967

End: 1380770

Strand: Direct

Name: ypjD [H]

Synonym: PM1184

Alternate gene names: 15603049

Gene position: 1379967-1380770 (Clockwise)

Preceding gene: 15603047

Following gene: 15603050

Centisome position: 61.13

GC content: 38.06

Gene sequence:

>804_bases
ATGTGGCTTTCAATTTTTTCCGTGTTTTTTTATCTATTGAGTGTCTTACTCATTACCCCTATGTTGTTAAAAATTCAAGC
GGGCGAACCCGCATCGGTTCCCAATAGAATGCCTTTTTTAACGGCGGCATTACTCGCCATTCTTCTGCACTTTATCAATC
TTATTCCTCTTTTTACCGATTTAACCAGCGGTCAAAATTTCTCGGTTATCGAAATCAGTTCCTTAATCAGTGTTATGACA
GCAACGATCGCCACATTAGCGTTTTTATTTCGCATACACACTTTATGGTTTTTATTACCGATTATTTATTCTTTCGCCAT
CATTAATCTGGTCCTCAGTACCTTAATGCCGGCGCATTTTTTATATCATCTTAATCAAGATATGGGCTTATTTATTCATG
TAGGCTTATCACTGTTGACTTATTCGGTCTGTTCGATTGTCGCGTTATATTCCATTCAGTTAGTTTGGATCGATCGCGCC
TTAAAAAATAAAAAACTACCTTTTTCACCAATGATTCCACCGTTAATGACCGTAGAGCGCCATTTTTTTCGTTTAATGCT
GATAGGTGAAATATTACTCACAATTGTCCTCATTTCAGGGAGCTACCATTTATCGAAAACCTTTGCCCCACAAGACATTC
AGAAAGCTGTTTTTTCTTTCTTGGCTTGGATAGTCTTTGGGAGTGCACTGGTTGGTCATTGGAAACTCCATTGGCGTGGA
AAAAAAGTGGTGTATTATGCGCTTTTAGGTATCATTCTCCTGACTATCGCCTATTTTGGTAGTCGTGTAATGCTTGAAAT
ATAA

Upstream 100 bases:

>100_bases
ATACTGAAATCCCATAGATTTTCATCCTTTGTAATAAATTTATAGCGATTTCACAGTGAGAAAGTTAGAATGAACGGAGA
ACAAAGGTGAGGGAATTTCA

Downstream 100 bases:

>100_bases
ACAAGATTTATTTATGCTACGCCATAGTAAAAGTGCGGTTCAAAAAACGAAAAAAATGACCGCACTTTTCGATTTTTGAT
TAACTCGCAAAAGGATGCAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MWLSIFSVFFYLLSVLLITPMLLKIQAGEPASVPNRMPFLTAALLAILLHFINLIPLFTDLTSGQNFSVIEISSLISVMT
ATIATLAFLFRIHTLWFLLPIIYSFAIINLVLSTLMPAHFLYHLNQDMGLFIHVGLSLLTYSVCSIVALYSIQLVWIDRA
LKNKKLPFSPMIPPLMTVERHFFRLMLIGEILLTIVLISGSYHLSKTFAPQDIQKAVFSFLAWIVFGSALVGHWKLHWRG
KKVVYYALLGIILLTIAYFGSRVMLEI

Sequences:

>Translated_267_residues
MWLSIFSVFFYLLSVLLITPMLLKIQAGEPASVPNRMPFLTAALLAILLHFINLIPLFTDLTSGQNFSVIEISSLISVMT
ATIATLAFLFRIHTLWFLLPIIYSFAIINLVLSTLMPAHFLYHLNQDMGLFIHVGLSLLTYSVCSIVALYSIQLVWIDRA
LKNKKLPFSPMIPPLMTVERHFFRLMLIGEILLTIVLISGSYHLSKTFAPQDIQKAVFSFLAWIVFGSALVGHWKLHWRG
KKVVYYALLGIILLTIAYFGSRVMLEI
>Mature_267_residues
MWLSIFSVFFYLLSVLLITPMLLKIQAGEPASVPNRMPFLTAALLAILLHFINLIPLFTDLTSGQNFSVIEISSLISVMT
ATIATLAFLFRIHTLWFLLPIIYSFAIINLVLSTLMPAHFLYHLNQDMGLFIHVGLSLLTYSVCSIVALYSIQLVWIDRA
LKNKKLPFSPMIPPLMTVERHFFRLMLIGEILLTIVLISGSYHLSKTFAPQDIQKAVFSFLAWIVFGSALVGHWKLHWRG
KKVVYYALLGIILLTIAYFGSRVMLEI

Specific function: Unknown

COG id: COG4137

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI145693174, Length=265, Percent_Identity=40.377358490566, Blast_Score=191, Evalue=4e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 30278; Mature: 30278

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWLSIFSVFFYLLSVLLITPMLLKIQAGEPASVPNRMPFLTAALLAILLHFINLIPLFTD
CHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LTSGQNFSVIEISSLISVMTATIATLAFLFRIHTLWFLLPIIYSFAIINLVLSTLMPAHF
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LYHLNQDMGLFIHVGLSLLTYSVCSIVALYSIQLVWIDRALKNKKLPFSPMIPPLMTVER
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
HFFRLMLIGEILLTIVLISGSYHLSKTFAPQDIQKAVFSFLAWIVFGSALVGHWKLHWRG
HHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEC
KKVVYYALLGIILLTIAYFGSRVMLEI
CHHHHHHHHHHHHHHHHHHCCEEEEEC
>Mature Secondary Structure
MWLSIFSVFFYLLSVLLITPMLLKIQAGEPASVPNRMPFLTAALLAILLHFINLIPLFTD
CHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LTSGQNFSVIEISSLISVMTATIATLAFLFRIHTLWFLLPIIYSFAIINLVLSTLMPAHF
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LYHLNQDMGLFIHVGLSLLTYSVCSIVALYSIQLVWIDRALKNKKLPFSPMIPPLMTVER
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
HFFRLMLIGEILLTIVLISGSYHLSKTFAPQDIQKAVFSFLAWIVFGSALVGHWKLHWRG
HHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEC
KKVVYYALLGIILLTIAYFGSRVMLEI
CHHHHHHHHHHHHHHHHHHCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]