Click here to switch to the map view.

The map label for this gene is rliB

Identifier: 15673482

GI number: 15673482

Start: 1535202

End: 1536239

Strand: Direct

Name: rliB

Synonym: L0146

Alternate gene names: 15673482

Gene position: 1535202-1536239 (Clockwise)

Preceding gene: 15673466

Following gene: 15673483

Centisome position: 64.9

GC content: 34.97

Gene sequence:

>1038_bases
ATGAGCTTACCACTCTACCAGCAGATTTCCGATGATTTAAAGCAAAAAATTGTCACTAAAACATTTAAATCAGGAGACCA
GCTTCCCACTGAAAAAGAACTCTCAGAGACTTATTCAGTTAGCCGCATTACTGCAAAAAGAGCTCTTACTGAATTAGAAC
AGCTTGGTCTTGTCAGTAGAACACGAGGAAAAGGAACTTTTGTCCAAGAATTAAATAAAAACCATACCAAACTATTAAAA
AGAGTGCTCTTTATTATTCCTTTTGAAGGAATGTCATTTGGAGATTTCACACAAGGTTTGGTTCCTGCTTTAAAAGTTGA
AAACACAACCGTATTTATCACTTACGAAAGTTACCTTAAAGAAAATACAGCGGATGATATTAAAGAAAATTTTGATGGAT
TAATTTACTATCCAATGTATACAGAAGATTATCTAGATATCTTATTAGAACTTTCACTACAAAACTTTCCTGTCGTTCTT
TTAGATAAACAAATTTACGACCTCGGATTTCCTTGCGTTTCCTCAGATAACTTTAATGGTGGTGAGCAAGCCGCTCAAGC
GCTCTTAAATTTAGGGCATAAACGAATTGCTTTTGTGGCTAGTAATGATACCCACCATCCCCAAACAACAAGAAATCGAT
ACTTAGGATATGTCAAAGTTCTAAAAGAACAAGGAATCAAGTTTCACACTACTCTTGATGACTCACTTTATACCGAAAGT
TCTGTTTTGGAACTTATTCATAATGAAAAAGTCACAGGACTTATCTGTGAAAATGACTTAGTCGCTCTTCAAACTATGAA
GACTTTGCAAGATAGCCATTTTTCTGTTCCAAATGATATATCAATTATTGGTTTTGATGATATTCAAGCAGCAAGCTTAT
CAAATCCGCCATTAACAACCATTGCTCAAGATTTCATTGGTATGGGAAGAATCGCTGGCGAACTGCTTTTAGACTGGATT
AAAAGCGGGCAAACCCCCAAAGATGTCAAAGTTCCAATCAATTTAATTAAAAGAAAAACAACTGAGGAGTTGAAATGA

Upstream 100 bases:

>100_bases
AAAAAGCCTATTTTTATCATTTTCACTTGTAAAAGACTTGTTTTTTTATAAAAAAAGAGTAAAATATGATATATCAAATA
AAATACAGAGGGATACTTCT

Downstream 100 bases:

>100_bases
AGATAAACAAAATTGATACCCGTCATGGTACTGCTAATCAATCCACTTTTTCACATGGGAATTGCCTTCCTTACACTGGT
TTTCCTTGGGGAATGAATTA

Product: transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 345; Mature: 344

Protein sequence:

>345_residues
MSLPLYQQISDDLKQKIVTKTFKSGDQLPTEKELSETYSVSRITAKRALTELEQLGLVSRTRGKGTFVQELNKNHTKLLK
RVLFIIPFEGMSFGDFTQGLVPALKVENTTVFITYESYLKENTADDIKENFDGLIYYPMYTEDYLDILLELSLQNFPVVL
LDKQIYDLGFPCVSSDNFNGGEQAAQALLNLGHKRIAFVASNDTHHPQTTRNRYLGYVKVLKEQGIKFHTTLDDSLYTES
SVLELIHNEKVTGLICENDLVALQTMKTLQDSHFSVPNDISIIGFDDIQAASLSNPPLTTIAQDFIGMGRIAGELLLDWI
KSGQTPKDVKVPINLIKRKTTEELK

Sequences:

>Translated_345_residues
MSLPLYQQISDDLKQKIVTKTFKSGDQLPTEKELSETYSVSRITAKRALTELEQLGLVSRTRGKGTFVQELNKNHTKLLK
RVLFIIPFEGMSFGDFTQGLVPALKVENTTVFITYESYLKENTADDIKENFDGLIYYPMYTEDYLDILLELSLQNFPVVL
LDKQIYDLGFPCVSSDNFNGGEQAAQALLNLGHKRIAFVASNDTHHPQTTRNRYLGYVKVLKEQGIKFHTTLDDSLYTES
SVLELIHNEKVTGLICENDLVALQTMKTLQDSHFSVPNDISIIGFDDIQAASLSNPPLTTIAQDFIGMGRIAGELLLDWI
KSGQTPKDVKVPINLIKRKTTEELK
>Mature_344_residues
SLPLYQQISDDLKQKIVTKTFKSGDQLPTEKELSETYSVSRITAKRALTELEQLGLVSRTRGKGTFVQELNKNHTKLLKR
VLFIIPFEGMSFGDFTQGLVPALKVENTTVFITYESYLKENTADDIKENFDGLIYYPMYTEDYLDILLELSLQNFPVVLL
DKQIYDLGFPCVSSDNFNGGEQAAQALLNLGHKRIAFVASNDTHHPQTTRNRYLGYVKVLKEQGIKFHTTLDDSLYTESS
VLELIHNEKVTGLICENDLVALQTMKTLQDSHFSVPNDISIIGFDDIQAASLSNPPLTTIAQDFIGMGRIAGELLLDWIK
SGQTPKDVKVPINLIKRKTTEELK

Specific function: Transcriptional repressor of the arabinose utilization genes [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788474, Length=223, Percent_Identity=30.0448430493274, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1790369, Length=315, Percent_Identity=26.3492063492064, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1786540, Length=225, Percent_Identity=30.2222222222222, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787948, Length=227, Percent_Identity=26.431718061674, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1789068, Length=191, Percent_Identity=29.3193717277487, Blast_Score=75, Evalue=9e-15,
Organism=Escherichia coli, GI1790194, Length=170, Percent_Identity=30, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1789202, Length=168, Percent_Identity=30.3571428571429, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI48994940, Length=326, Percent_Identity=23.0061349693252, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1786950, Length=72, Percent_Identity=38.8888888888889, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR001761
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 38891; Mature: 38760

Theoretical pI: Translated: 5.26; Mature: 5.26

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLPLYQQISDDLKQKIVTKTFKSGDQLPTEKELSETYSVSRITAKRALTELEQLGLVSR
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHC
TRGKGTFVQELNKNHTKLLKRVLFIIPFEGMSFGDFTQGLVPALKVENTTVFITYESYLK
CCCCCHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHCCCCEEECCEEEEEEEHHHHC
ENTADDIKENFDGLIYYPMYTEDYLDILLELSLQNFPVVLLDKQIYDLGFPCVSSDNFNG
CCCHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCCCCCCCCC
GEQAAQALLNLGHKRIAFVASNDTHHPQTTRNRYLGYVKVLKEQGIKFHTTLDDSLYTES
HHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
SVLELIHNEKVTGLICENDLVALQTMKTLQDSHFSVPNDISIIGFDDIQAASLSNPPLTT
HHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCHHH
IAQDFIGMGRIAGELLLDWIKSGQTPKDVKVPINLIKRKTTEELK
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SLPLYQQISDDLKQKIVTKTFKSGDQLPTEKELSETYSVSRITAKRALTELEQLGLVSR
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHC
TRGKGTFVQELNKNHTKLLKRVLFIIPFEGMSFGDFTQGLVPALKVENTTVFITYESYLK
CCCCCHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHCCCCEEECCEEEEEEEHHHHC
ENTADDIKENFDGLIYYPMYTEDYLDILLELSLQNFPVVLLDKQIYDLGFPCVSSDNFNG
CCCHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCCCCCCCCC
GEQAAQALLNLGHKRIAFVASNDTHHPQTTRNRYLGYVKVLKEQGIKFHTTLDDSLYTES
HHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
SVLELIHNEKVTGLICENDLVALQTMKTLQDSHFSVPNDISIIGFDDIQAASLSNPPLTT
HHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCHHH
IAQDFIGMGRIAGELLLDWIKSGQTPKDVKVPINLIKRKTTEELK
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA