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The map label for this gene is ypdD

Identifier: 15673483

GI number: 15673483

Start: 1536236

End: 1538389

Strand: Direct

Name: ypdD

Synonym: L135972

Alternate gene names: NA

Gene position: 1536236-1538389 (Clockwise)

Preceding gene: 15673482

Following gene: 15673492

Centisome position: 64.94

GC content: 38.21

Gene sequence:

>2154_bases
ATGAAGATAAACAAAATTGATACCCGTCATGGTACTGCTAATCAATCCACTTTTTCACATGGGAATTGCCTTCCTTACAC
TGGTTTTCCTTGGGGAATGAATTATTTTTCCCCTTCAACCGGTGCTGCTCGTGGAGCTTGGTGGTTTCATCCAGAAGACC
GTACCTTTGAAGGCTACCGAATCACTCACCAACCCAGTCCTTGGATGGGAGATTTCTCACATTTGACAATGACGCCTGTT
GCAGGTCCTTTGCCTGAAACTTCCTTGTGGCACACAGTGAGTTCATACCGTCCAGAAGAATCAACTTTTAATCCAACGCA
ACTCAAAATTACTCAATTACGTTATCAGATTACATCTCAGTTAATTCCATCAATGTATGGTGGAATTCTATCAATGAATT
ATCAAAATTTAAGCCTTAAAGATAATGGCTTGATGCTTCATCTCCCCGGTTCTTATGAACTTCAACAACTTGACGATTAC
AGCTTAGAGCTTTCAATTATTAATTTTGCGGGTTGTGAAGATGAAAATTTTACTTTCTATCTCAAATTTACTGCTGACCA
ACCTTTTGTTTTAAGTGGAAATTTATCTGATGAAGATTCTTCTGTTCGCTTAGATTTCAAAGCAGCCAAGCAGGTTCAAA
TACATTTTGCTACCTCTTTTATTTCCAAGGAACAAGCCGCTCTTAATCTGGAGCGTGAACAAGATAATTCAGCAGAAACA
TATTTGGAAAATGCTGAATCAGCTTGGAATAACCTTTTTTCACGTATCGAAATTGAGCATCATAATCAACAAGAAGTTTC
CACTTTCTATCACAATCTTTATCGCTCATTTCTCTTTCCACAAACTTTTTATGAATTTGACCAAGAGCATCAAAAAATCC
ATTACGATACAAGCTCTAAAACTGTCAAGAAAGGCCCGCTCTATACAAACAATGGCTTCTGGGATACTTTCCGAACAGTC
TATCCGCTTTATAGTCTAATAGCCGTTGACGAGTACGGTGATATGCTCGAAGGTTTCCTAAATTCTTATCGTGCGACTGG
TTTTCTTCCAAAATGGCTTTCTCCTGATGAACGTGGTCTAATGCCCGGTACCTTGATAGACGCTGTCATTGCTGATGCTG
CAAGCAAAAACATTCGTCCTGATTTGATGCCCGAGTTTTTGGAAGCAATGAAAAAAGGAGCCACAAGTCAATCTGAAAAC
TCTAATTACGGCCGTCGTGGCACAAAAGATTATCTAAAACTTGGTTATGTTCCGCTCACTCACCATGAATCAGTTAATCA
CACTTTAGATTACGCATTTTCTGATTATTGTATTTCTCAAGTGGCGAAACAAACCGGTGACAAAGAAATTTCAGACTTCT
ATGCCCATCAAGCAAAAGACTATCAAAATATTTTTGATTCTGAAACTGGTTTTATGCGAGCAAAAGATGCTGACGGAAAT
TTCAGAGCTGACTTTTTAGATATTCGTTGGGGTCGTGATTATGCAGAAGGTTCTGCTTGGCAGACTTCTTGGTCAGTTCT
TCATGATTTTGCTGGATTGATTAAACTACATGGCTCAAGAGAAAATTTTGAAAACAAACTCATCGAGCTTTGCAACCAAC
GACCAAATTTCAATGTTGAAGGATATGGTTTTGAAATTCACGAAATGAGTGAAATGGCTGCTATCGAATTTGGACAAGTG
GCTATCTCAAATCAACCAAGTTTCCATTACCCATACCTTTTTAGCTACATTGGTAAACCTTGGATGGCTACGCCTTTAAT
CAAAAATTTACTGACAGAAACATTTAATGATAGTCCGAAGGGCTATCCTGGTGACGAAGATAATGGAACAATGGCAGCTT
GGTATATTTTTTCAAGTTTAGGATTCTATCCAGTCACAGCTGCTTCTAATCAATATGTATTAGGAATTCCACTCTGGGAC
AAAGCTAGAATCAACCTTTCCTCTGGTCAGCAACTTACTATTCTTGCAGAACCAAATGCTCCGCAACAAGTTTTCGTCAA
CCAAATCACATTTACTGACAAAAAAGTCAATGATACTTTTATCAAGCACGAAGAATTGATAAAAGGCGGAACCCTAAAAT
TTGATTTAGGAATCGTACCAAATCCACTTAAATATACGAACGAACAACTTCCTTATTCACTGACAGAAAATTAA

Upstream 100 bases:

>100_bases
CTGGCGAACTGCTTTTAGACTGGATTAAAAGCGGGCAAACCCCCAAAGATGTCAAAGTTCCAATCAATTTAATTAAAAGA
AAAACAACTGAGGAGTTGAA

Downstream 100 bases:

>100_bases
TTACTGACAGACCAGATATAATCATTCTGTCAGTAAAAAAACACGCTTGATTGATTAAAATCAGCGTGTTTTTTTATTTT
ATAAATTTAAGCCTATTTCT

Product: sugar hydrolase

Products: NA

Alternate protein names: Alpha-1 2-Mannosidase Family Protein; Glycoside Hydrolase Family; Sugar Hydrolase; Glycosyl Hydrolase Family; Secreted Protein; Glycoside Hydrolase Family Protein; Outer Membrane Protein; Cell Wall Antigen; Glycosyl Hydrolase; Exported Alpha-1 2-Mannosidase; Antigen; Glycosyltransferase; Alpha-1 2-Mannosidase Protein; Mannosidase

Number of amino acids: Translated: 717; Mature: 717

Protein sequence:

>717_residues
MKINKIDTRHGTANQSTFSHGNCLPYTGFPWGMNYFSPSTGAARGAWWFHPEDRTFEGYRITHQPSPWMGDFSHLTMTPV
AGPLPETSLWHTVSSYRPEESTFNPTQLKITQLRYQITSQLIPSMYGGILSMNYQNLSLKDNGLMLHLPGSYELQQLDDY
SLELSIINFAGCEDENFTFYLKFTADQPFVLSGNLSDEDSSVRLDFKAAKQVQIHFATSFISKEQAALNLEREQDNSAET
YLENAESAWNNLFSRIEIEHHNQQEVSTFYHNLYRSFLFPQTFYEFDQEHQKIHYDTSSKTVKKGPLYTNNGFWDTFRTV
YPLYSLIAVDEYGDMLEGFLNSYRATGFLPKWLSPDERGLMPGTLIDAVIADAASKNIRPDLMPEFLEAMKKGATSQSEN
SNYGRRGTKDYLKLGYVPLTHHESVNHTLDYAFSDYCISQVAKQTGDKEISDFYAHQAKDYQNIFDSETGFMRAKDADGN
FRADFLDIRWGRDYAEGSAWQTSWSVLHDFAGLIKLHGSRENFENKLIELCNQRPNFNVEGYGFEIHEMSEMAAIEFGQV
AISNQPSFHYPYLFSYIGKPWMATPLIKNLLTETFNDSPKGYPGDEDNGTMAAWYIFSSLGFYPVTAASNQYVLGIPLWD
KARINLSSGQQLTILAEPNAPQQVFVNQITFTDKKVNDTFIKHEELIKGGTLKFDLGIVPNPLKYTNEQLPYSLTEN

Sequences:

>Translated_717_residues
MKINKIDTRHGTANQSTFSHGNCLPYTGFPWGMNYFSPSTGAARGAWWFHPEDRTFEGYRITHQPSPWMGDFSHLTMTPV
AGPLPETSLWHTVSSYRPEESTFNPTQLKITQLRYQITSQLIPSMYGGILSMNYQNLSLKDNGLMLHLPGSYELQQLDDY
SLELSIINFAGCEDENFTFYLKFTADQPFVLSGNLSDEDSSVRLDFKAAKQVQIHFATSFISKEQAALNLEREQDNSAET
YLENAESAWNNLFSRIEIEHHNQQEVSTFYHNLYRSFLFPQTFYEFDQEHQKIHYDTSSKTVKKGPLYTNNGFWDTFRTV
YPLYSLIAVDEYGDMLEGFLNSYRATGFLPKWLSPDERGLMPGTLIDAVIADAASKNIRPDLMPEFLEAMKKGATSQSEN
SNYGRRGTKDYLKLGYVPLTHHESVNHTLDYAFSDYCISQVAKQTGDKEISDFYAHQAKDYQNIFDSETGFMRAKDADGN
FRADFLDIRWGRDYAEGSAWQTSWSVLHDFAGLIKLHGSRENFENKLIELCNQRPNFNVEGYGFEIHEMSEMAAIEFGQV
AISNQPSFHYPYLFSYIGKPWMATPLIKNLLTETFNDSPKGYPGDEDNGTMAAWYIFSSLGFYPVTAASNQYVLGIPLWD
KARINLSSGQQLTILAEPNAPQQVFVNQITFTDKKVNDTFIKHEELIKGGTLKFDLGIVPNPLKYTNEQLPYSLTEN
>Mature_717_residues
MKINKIDTRHGTANQSTFSHGNCLPYTGFPWGMNYFSPSTGAARGAWWFHPEDRTFEGYRITHQPSPWMGDFSHLTMTPV
AGPLPETSLWHTVSSYRPEESTFNPTQLKITQLRYQITSQLIPSMYGGILSMNYQNLSLKDNGLMLHLPGSYELQQLDDY
SLELSIINFAGCEDENFTFYLKFTADQPFVLSGNLSDEDSSVRLDFKAAKQVQIHFATSFISKEQAALNLEREQDNSAET
YLENAESAWNNLFSRIEIEHHNQQEVSTFYHNLYRSFLFPQTFYEFDQEHQKIHYDTSSKTVKKGPLYTNNGFWDTFRTV
YPLYSLIAVDEYGDMLEGFLNSYRATGFLPKWLSPDERGLMPGTLIDAVIADAASKNIRPDLMPEFLEAMKKGATSQSEN
SNYGRRGTKDYLKLGYVPLTHHESVNHTLDYAFSDYCISQVAKQTGDKEISDFYAHQAKDYQNIFDSETGFMRAKDADGN
FRADFLDIRWGRDYAEGSAWQTSWSVLHDFAGLIKLHGSRENFENKLIELCNQRPNFNVEGYGFEIHEMSEMAAIEFGQV
AISNQPSFHYPYLFSYIGKPWMATPLIKNLLTETFNDSPKGYPGDEDNGTMAAWYIFSSLGFYPVTAASNQYVLGIPLWD
KARINLSSGQQLTILAEPNAPQQVFVNQITFTDKKVNDTFIKHEELIKGGTLKFDLGIVPNPLKYTNEQLPYSLTEN

Specific function: Unknown

COG id: COG3537

COG function: function code G; Putative alpha-1,2-mannosidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 81909; Mature: 81909

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKINKIDTRHGTANQSTFSHGNCLPYTGFPWGMNYFSPSTGAARGAWWFHPEDRTFEGYR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEE
ITHQPSPWMGDFSHLTMTPVAGPLPETSLWHTVSSYRPEESTFNPTQLKITQLRYQITSQ
EECCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHH
LIPSMYGGILSMNYQNLSLKDNGLMLHLPGSYELQQLDDYSLELSIINFAGCEDENFTFY
HHHHHHCCEEEECCCCCEECCCCEEEEECCCCCHHHCCCCEEEEEEEEEECCCCCCEEEE
LKFTADQPFVLSGNLSDEDSSVRLDFKAAKQVQIHFATSFISKEQAALNLEREQDNSAET
EEEECCCCEEEECCCCCCCCCEEEEEECCCEEEEEEHHHHHHHHHHHHCCCCCCCCCHHH
YLENAESAWNNLFSRIEIEHHNQQEVSTFYHNLYRSFLFPQTFYEFDQEHQKIHYDTSSK
HHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHCHHHHHHHCHHHCEEEECCCCC
TVKKGPLYTNNGFWDTFRTVYPLYSLIAVDEYGDMLEGFLNSYRATGFLPKWLSPDERGL
CEECCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
MPGTLIDAVIADAASKNIRPDLMPEFLEAMKKGATSQSENSNYGRRGTKDYLKLGYVPLT
CCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCEEEE
HHESVNHTLDYAFSDYCISQVAKQTGDKEISDFYAHQAKDYQNIFDSETGFMRAKDADGN
CCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC
FRADFLDIRWGRDYAEGSAWQTSWSVLHDFAGLIKLHGSRENFENKLIELCNQRPNFNVE
EEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHCCCCCCCCC
GYGFEIHEMSEMAAIEFGQVAISNQPSFHYPYLFSYIGKPWMATPLIKNLLTETFNDSPK
CCCEEHHHHHHHHHHHHCEEEECCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCC
GYPGDEDNGTMAAWYIFSSLGFYPVTAASNQYVLGIPLWDKARINLSSGQQLTILAEPNA
CCCCCCCCCCEEEEEHHHHCCCEEEEECCCCEEEEECCCCCCEEEECCCCEEEEEECCCC
PQQVFVNQITFTDKKVNDTFIKHEELIKGGTLKFDLGIVPNPLKYTNEQLPYSLTEN
CHHHEEEEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCCCCHHCCCCCCCEECCCC
>Mature Secondary Structure
MKINKIDTRHGTANQSTFSHGNCLPYTGFPWGMNYFSPSTGAARGAWWFHPEDRTFEGYR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEE
ITHQPSPWMGDFSHLTMTPVAGPLPETSLWHTVSSYRPEESTFNPTQLKITQLRYQITSQ
EECCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHH
LIPSMYGGILSMNYQNLSLKDNGLMLHLPGSYELQQLDDYSLELSIINFAGCEDENFTFY
HHHHHHCCEEEECCCCCEECCCCEEEEECCCCCHHHCCCCEEEEEEEEEECCCCCCEEEE
LKFTADQPFVLSGNLSDEDSSVRLDFKAAKQVQIHFATSFISKEQAALNLEREQDNSAET
EEEECCCCEEEECCCCCCCCCEEEEEECCCEEEEEEHHHHHHHHHHHHCCCCCCCCCHHH
YLENAESAWNNLFSRIEIEHHNQQEVSTFYHNLYRSFLFPQTFYEFDQEHQKIHYDTSSK
HHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHCHHHHHHHCHHHCEEEECCCCC
TVKKGPLYTNNGFWDTFRTVYPLYSLIAVDEYGDMLEGFLNSYRATGFLPKWLSPDERGL
CEECCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
MPGTLIDAVIADAASKNIRPDLMPEFLEAMKKGATSQSENSNYGRRGTKDYLKLGYVPLT
CCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCEEEE
HHESVNHTLDYAFSDYCISQVAKQTGDKEISDFYAHQAKDYQNIFDSETGFMRAKDADGN
CCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC
FRADFLDIRWGRDYAEGSAWQTSWSVLHDFAGLIKLHGSRENFENKLIELCNQRPNFNVE
EEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHCCCCCCCCC
GYGFEIHEMSEMAAIEFGQVAISNQPSFHYPYLFSYIGKPWMATPLIKNLLTETFNDSPK
CCCEEHHHHHHHHHHHHCEEEECCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCC
GYPGDEDNGTMAAWYIFSSLGFYPVTAASNQYVLGIPLWDKARINLSSGQQLTILAEPNA
CCCCCCCCCCEEEEEHHHHCCCEEEEECCCCEEEEECCCCCCEEEECCCCEEEEEECCCC
PQQVFVNQITFTDKKVNDTFIKHEELIKGGTLKFDLGIVPNPLKYTNEQLPYSLTEN
CHHHEEEEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCCCCHHCCCCCCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA