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The map label for this gene is cydB_2

Identifier: 16120338

GI number: 16120338

Start: 352775

End: 353770

Strand: Reverse

Name: cydB_2

Synonym: VNG6471G

Alternate gene names: 16120338

Gene position: 353770-352775 (Counterclockwise)

Preceding gene: 16120339

Following gene: 16120335

Centisome position: 96.81

GC content: 67.57

Gene sequence:

>996_bases
ATGACTGACCCACTGATTCCCGTCGACACGTACCTCGTCGACTCCCTTCCGGAGGTCTGGTTCGGCGCCGTGGTGTTCGC
GTTGGGGATGTACATCGTCCTCGATGGCTTCGACTTCGGTATCGGGATGCTGTACGCGACCCGGACGGACGAACACGAGC
GGGAGACGTTCCTGGCGGCGTTCGGCCCGGTGTGGGACGCCAACGAGGTGTGGATCGTAGCGTTCGGGACGATGTTGCTG
GCGGCGTTCCCGCGCGTGTACTCGCGGCTCCTGGCGGACAACTATCTGCTCGCACTCGGGTTCGTCGTCGCGTTGGTGTT
CCGTGGGCTCGGCCCGGAGCTCCGCGAGCAGCGCGAGGACGAGCGCTGGAAGCGCTACACCGACTACGCCTTCGTCGGCG
GGAGCGTGTTCGCGCCGCTGCTGTTGGGGATGCTCGCCGGCCGGTGGCTCTTCGCTGGGGCGACCCTACCGGTGGTGCTG
ACCGGCGTCGGTCTGGTCGCGGTCTCGATAGTCACGGGGGCGGCGTTCCTCGCGGCGAAGACCGACTCTGGGTTGGCGTC
GGAGTTGCGTTCGTACGGCGTCGGCGCGACGGTCGCGTACCTCGGCGGCGTGGTCGTCCTGTTGGGGACCGTCGTCGCGA
CCGATGCGGGTGGGGCCGCCAGCGCGGTGCTCTCGCTGCCCGTCGCTGCAGTCGTCGCGCTCTCTATCGTCGCCGGGTTG
GGCGGGAGCGTGCTGGCCAGACGCGGCCGGTACCGAGCCTGGCTCGCGAGCGCGCTGGCGCTCCCCACGCTGCTGACGCT
CTTGGTCGCGGTGTTGCTGTATCCGACGGTCTATCCGCCGACCGGACTGCTGGTGAGAGAAGCCGTCGTGTCGCCGCTAG
CGTTGAACCTCGTGACCGTCCTCGGATTCCCGGTCCTGCTGCTGGTCTTGTGGTACTTCAAATTCCTTTACGGCGTGTTC
AGCGGTCCAATCGAGGGAGAGGGTTACGGCGGGTGA

Upstream 100 bases:

>100_bases
TACGTCCTGAAGTGGCTAATTCGTGGAGAGCTCCGGTCGCTCGGCGTCCAGGAGTCGAGTGCGGGCCGCTGGCGTGGCCC
CCTCCCGTGGGTGACCAGCG

Downstream 100 bases:

>100_bases
CATCCTCCCAGACCGACCTTAGCTGGACAACACGAGCAGGTCGACCGCTTCGGTGGTTTCTGCCCGCCTAAGGCACTGGA
AAGCTGGGAATCGGGCTCCC

Product: cytochrome d oxidase chain II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 331; Mature: 330

Protein sequence:

>331_residues
MTDPLIPVDTYLVDSLPEVWFGAVVFALGMYIVLDGFDFGIGMLYATRTDEHERETFLAAFGPVWDANEVWIVAFGTMLL
AAFPRVYSRLLADNYLLALGFVVALVFRGLGPELREQREDERWKRYTDYAFVGGSVFAPLLLGMLAGRWLFAGATLPVVL
TGVGLVAVSIVTGAAFLAAKTDSGLASELRSYGVGATVAYLGGVVVLLGTVVATDAGGAASAVLSLPVAAVVALSIVAGL
GGSVLARRGRYRAWLASALALPTLLTLLVAVLLYPTVYPPTGLLVREAVVSPLALNLVTVLGFPVLLLVLWYFKFLYGVF
SGPIEGEGYGG

Sequences:

>Translated_331_residues
MTDPLIPVDTYLVDSLPEVWFGAVVFALGMYIVLDGFDFGIGMLYATRTDEHERETFLAAFGPVWDANEVWIVAFGTMLL
AAFPRVYSRLLADNYLLALGFVVALVFRGLGPELREQREDERWKRYTDYAFVGGSVFAPLLLGMLAGRWLFAGATLPVVL
TGVGLVAVSIVTGAAFLAAKTDSGLASELRSYGVGATVAYLGGVVVLLGTVVATDAGGAASAVLSLPVAAVVALSIVAGL
GGSVLARRGRYRAWLASALALPTLLTLLVAVLLYPTVYPPTGLLVREAVVSPLALNLVTVLGFPVLLLVLWYFKFLYGVF
SGPIEGEGYGG
>Mature_330_residues
TDPLIPVDTYLVDSLPEVWFGAVVFALGMYIVLDGFDFGIGMLYATRTDEHERETFLAAFGPVWDANEVWIVAFGTMLLA
AFPRVYSRLLADNYLLALGFVVALVFRGLGPELREQREDERWKRYTDYAFVGGSVFAPLLLGMLAGRWLFAGATLPVVLT
GVGLVAVSIVTGAAFLAAKTDSGLASELRSYGVGATVAYLGGVVVLLGTVVATDAGGAASAVLSLPVAAVVALSIVAGLG
GSVLARRGRYRAWLASALALPTLLTLLVAVLLYPTVYPPTGLLVREAVVSPLALNLVTVLGFPVLLLVLWYFKFLYGVFS
GPIEGEGYGG

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=353, Percent_Identity=28.0453257790368, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787213, Length=137, Percent_Identity=32.1167883211679, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 35063; Mature: 34931

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
TDPLIPVDTYLVDSLPEVWFGAVVFALGMYIVLDGFDFGIGMLYATRTDEHERETFLAA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHEEEECCCHHHHHHHHHH
FGPVWDANEVWIVAFGTMLLAAFPRVYSRLLADNYLLALGFVVALVFRGLGPELREQRED
HCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
ERWKRYTDYAFVGGSVFAPLLLGMLAGRWLFAGATLPVVLTGVGLVAVSIVTGAAFLAAK
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
TDSGLASELRSYGVGATVAYLGGVVVLLGTVVATDAGGAASAVLSLPVAAVVALSIVAGL
CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHC
GGSVLARRGRYRAWLASALALPTLLTLLVAVLLYPTVYPPTGLLVREAVVSPLALNLVTV
CHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
LGFPVLLLVLWYFKFLYGVFSGPIEGEGYGG
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]