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The map label for this gene is cydA_2

Identifier: 16120339

GI number: 16120339

Start: 353763

End: 355211

Strand: Reverse

Name: cydA_2

Synonym: VNG6473G

Alternate gene names: 16120339

Gene position: 355211-353763 (Counterclockwise)

Preceding gene: 16120343

Following gene: 16120338

Centisome position: 97.2

GC content: 63.15

Gene sequence:

>1449_bases
ATGGTCCCAGCGACACTTCTATCCACCGTCGACCTGGGGTGGATGGCCTTGCTCTCTCCAGAAATCGCGAGCCGTATGCA
GTTCGGGTGGACGATCTCCGTGCACATCATTTTCGCGTCTCTCTCGATCGGGCTCGCACCGTTTATTATCTACTTCACGT
GGAAAGACGTACGGACTAACGAGCAGCGGTATGCGCGGTTACGCTCGTTTTGGGTGAAGGTGTTCGCCGTTGGCTTCGTG
ATGGGAACGGTCACCGGTATCCCAATGAGCTTCCAGTTCGGGACGAACTTCCCGCAGTTCGCCACAATCGCCGGTGAACT
GATCGGTGGGCCACTCGCGTTCGAGGCGAAGATGGCGTTCTTCTTGGAAGCCGTCTTCCTCGGCGTGTTGCTGTACGGCC
GAGAGCGGGTCGCGGACCGAACGTACGTCCTCTCCTCGGTCCTCGTCGGCGTCGGTGCCTGGCTGTCGGGGTTCTGGATC
CTGGTCGTCAACGCGTGGATGCAGACGCCTCGGGGCTACGAGATGGTCACCCGCAACGGGATGGAGGTCGCCAAGCTTAC
TGACCCGGTCGCGGCGTTCCTCACCCCGCGAATGCCGTGGATGTACGTTCACATGATGAACGCGTCGGTGATCTCGGTCG
CGCTGCTCGTCGCGGGCGTCTCGGCATACCTCGTCTGGAAGAAGCCGGACGCGGATGCCTGGAACTCCGCGCTCAAACTC
GCCGTCGTCCTGCTACTCGTCTCGGCGCCGTTCCAAGCGGTCCACGGTGACGCCTACGGCCGGCACGTTGAGGATACGCA
GCCCCAGAAGTTCGCCGCGATGGAAGCCCACTACGAGACGGGGTCGGCCGACCTCCACCTGCTCGCGTTCCCGAAGTCCC
TCGACGCGCTCACCGACCCGCGCACGGAGAACCTCTTCACGGTGAGTCTCCCCGGAATCGGGTCGTTCCTCGCCAGTGGC
GGGGACTTCGACGCCGAGGTCATCGGCCTGAACGAGTACGAGGAGAACCCACCCGTCGCGCTCGTGTTCTGGTCGTTCCG
ATTCATGGTCGGGCTCGGGTTCCTGTTCATCGGGCTCGCGCTCTGGGGCGGGTACCTCACGTACCGCGGACGGTTGACAG
AGAGTACGCGCTACCTGAAGTCGATGATCGCGGCATCGCCATTCGGCTATGCGGCGTTACTCACCGGCTGGTACGTCACC
GAGATCGGCCGCCAACCGTGGGTCATCCAGGGCGAACTCAAGACGAGCGAGGCGGTCTCCTCAACGCTCACTGGGACCGA
GGCGACCCTGACTCTCGTCGGGTTTGTCGTCCTCTACATCGCGTTGATACTGACTGCGCTGTACGTCCTGAAGTGGCTAA
TTCGTGGAGAGCTCCGGTCGCTCGGCGTCCAGGAGTCGAGTGCGGGCCGCTGGCGTGGCCCCCTCCCGTGGGTGACCAGC
GATGACTGA

Upstream 100 bases:

>100_bases
TTGGGAACTTATATCCTCACCTATAAAATTTTGTGGGGGTATCCCGAAATTCGGGAAATCGCCTAATTACTAATCATATT
GCGCCCCGCAGTGTCTACCC

Downstream 100 bases:

>100_bases
CCCACTGATTCCCGTCGACACGTACCTCGTCGACTCCCTTCCGGAGGTCTGGTTCGGCGCCGTGGTGTTCGCGTTGGGGA
TGTACATCGTCCTCGATGGC

Product: cytochrome d oxidase chain I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 482; Mature: 482

Protein sequence:

>482_residues
MVPATLLSTVDLGWMALLSPEIASRMQFGWTISVHIIFASLSIGLAPFIIYFTWKDVRTNEQRYARLRSFWVKVFAVGFV
MGTVTGIPMSFQFGTNFPQFATIAGELIGGPLAFEAKMAFFLEAVFLGVLLYGRERVADRTYVLSSVLVGVGAWLSGFWI
LVVNAWMQTPRGYEMVTRNGMEVAKLTDPVAAFLTPRMPWMYVHMMNASVISVALLVAGVSAYLVWKKPDADAWNSALKL
AVVLLLVSAPFQAVHGDAYGRHVEDTQPQKFAAMEAHYETGSADLHLLAFPKSLDALTDPRTENLFTVSLPGIGSFLASG
GDFDAEVIGLNEYEENPPVALVFWSFRFMVGLGFLFIGLALWGGYLTYRGRLTESTRYLKSMIAASPFGYAALLTGWYVT
EIGRQPWVIQGELKTSEAVSSTLTGTEATLTLVGFVVLYIALILTALYVLKWLIRGELRSLGVQESSAGRWRGPLPWVTS
DD

Sequences:

>Translated_482_residues
MVPATLLSTVDLGWMALLSPEIASRMQFGWTISVHIIFASLSIGLAPFIIYFTWKDVRTNEQRYARLRSFWVKVFAVGFV
MGTVTGIPMSFQFGTNFPQFATIAGELIGGPLAFEAKMAFFLEAVFLGVLLYGRERVADRTYVLSSVLVGVGAWLSGFWI
LVVNAWMQTPRGYEMVTRNGMEVAKLTDPVAAFLTPRMPWMYVHMMNASVISVALLVAGVSAYLVWKKPDADAWNSALKL
AVVLLLVSAPFQAVHGDAYGRHVEDTQPQKFAAMEAHYETGSADLHLLAFPKSLDALTDPRTENLFTVSLPGIGSFLASG
GDFDAEVIGLNEYEENPPVALVFWSFRFMVGLGFLFIGLALWGGYLTYRGRLTESTRYLKSMIAASPFGYAALLTGWYVT
EIGRQPWVIQGELKTSEAVSSTLTGTEATLTLVGFVVLYIALILTALYVLKWLIRGELRSLGVQESSAGRWRGPLPWVTS
DD
>Mature_482_residues
MVPATLLSTVDLGWMALLSPEIASRMQFGWTISVHIIFASLSIGLAPFIIYFTWKDVRTNEQRYARLRSFWVKVFAVGFV
MGTVTGIPMSFQFGTNFPQFATIAGELIGGPLAFEAKMAFFLEAVFLGVLLYGRERVADRTYVLSSVLVGVGAWLSGFWI
LVVNAWMQTPRGYEMVTRNGMEVAKLTDPVAAFLTPRMPWMYVHMMNASVISVALLVAGVSAYLVWKKPDADAWNSALKL
AVVLLLVSAPFQAVHGDAYGRHVEDTQPQKFAAMEAHYETGSADLHLLAFPKSLDALTDPRTENLFTVSLPGIGSFLASG
GDFDAEVIGLNEYEENPPVALVFWSFRFMVGLGFLFIGLALWGGYLTYRGRLTESTRYLKSMIAASPFGYAALLTGWYVT
EIGRQPWVIQGELKTSEAVSSTLTGTEATLTLVGFVVLYIALILTALYVLKWLIRGELRSLGVQESSAGRWRGPLPWVTS
DD

Specific function: Cytochrome Oxidase Subunit. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI1787212, Length=491, Percent_Identity=28.7169042769857, Blast_Score=181, Evalue=6e-47,
Organism=Escherichia coli, GI87081779, Length=311, Percent_Identity=31.8327974276527, Blast_Score=152, Evalue=4e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 53165; Mature: 53165

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVPATLLSTVDLGWMALLSPEIASRMQFGWTISVHIIFASLSIGLAPFIIYFTWKDVRTN
CCCHHHHHHHHHHHHHHHCHHHHHHHHCCEEEEEEEEEHHHHHCCCEEEEEEEECCCCCC
EQRYARLRSFWVKVFAVGFVMGTVTGIPMSFQFGTNFPQFATIAGELIGGPLAFEAKMAF
HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHH
FLEAVFLGVLLYGRERVADRTYVLSSVLVGVGAWLSGFWILVVNAWMQTPRGYEMVTRNG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCC
MEVAKLTDPVAAFLTPRMPWMYVHMMNASVISVALLVAGVSAYLVWKKPDADAWNSALKL
CCHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHCHHEEEEEECCCCHHHHHHHHH
AVVLLLVSAPFQAVHGDAYGRHVEDTQPQKFAAMEAHYETGSADLHLLAFPKSLDALTDP
HHHHHHHHCCHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCHHHHHCCC
RTENLFTVSLPGIGSFLASGGDFDAEVIGLNEYEENPPVALVFWSFRFMVGLGFLFIGLA
CCCCEEEEECCCHHHHHHCCCCCCEEEEECCCCCCCCCEEEEHHHHHHHHHHHHHHHHHH
LWGGYLTYRGRLTESTRYLKSMIAASPFGYAALLTGWYVTEIGRQPWVIQGELKTSEAVS
HHCCHHEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEEECCCCHHHHHH
STLTGTEATLTLVGFVVLYIALILTALYVLKWLIRGELRSLGVQESSAGRWRGPLPWVTS
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
DD
CC
>Mature Secondary Structure
MVPATLLSTVDLGWMALLSPEIASRMQFGWTISVHIIFASLSIGLAPFIIYFTWKDVRTN
CCCHHHHHHHHHHHHHHHCHHHHHHHHCCEEEEEEEEEHHHHHCCCEEEEEEEECCCCCC
EQRYARLRSFWVKVFAVGFVMGTVTGIPMSFQFGTNFPQFATIAGELIGGPLAFEAKMAF
HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHH
FLEAVFLGVLLYGRERVADRTYVLSSVLVGVGAWLSGFWILVVNAWMQTPRGYEMVTRNG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCC
MEVAKLTDPVAAFLTPRMPWMYVHMMNASVISVALLVAGVSAYLVWKKPDADAWNSALKL
CCHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHCHHEEEEEECCCCHHHHHHHHH
AVVLLLVSAPFQAVHGDAYGRHVEDTQPQKFAAMEAHYETGSADLHLLAFPKSLDALTDP
HHHHHHHHCCHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCHHHHHCCC
RTENLFTVSLPGIGSFLASGGDFDAEVIGLNEYEENPPVALVFWSFRFMVGLGFLFIGLA
CCCCEEEEECCCHHHHHHCCCCCCEEEEECCCCCCCCCEEEEHHHHHHHHHHHHHHHHHH
LWGGYLTYRGRLTESTRYLKSMIAASPFGYAALLTGWYVTEIGRQPWVIQGELKTSEAVS
HHCCHHEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEEECCCCHHHHHH
STLTGTEATLTLVGFVVLYIALILTALYVLKWLIRGELRSLGVQESSAGRWRGPLPWVTS
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
DD
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]