Click here to switch to the map view.

The map label for this gene is yabD

Identifier: 15836320

GI number: 15836320

Start: 884940

End: 885725

Strand: Direct

Name: yabD

Synonym: CPj0787

Alternate gene names: 15836320

Gene position: 884940-885725 (Clockwise)

Preceding gene: 15836319

Following gene: 15836321

Centisome position: 72.15

GC content: 43.89

Gene sequence:

>786_bases
GTGGATTTGGCTGATGCTCATGTTCATCTTTCTGATGATGCTTTTGAAGAAGATATTAACAGCGTATTACAGCGCGCTCA
AGATTCTGGAGTGTCACTAGTTGTTAATGTAACCACAACAGAAAAGGAATTAAATCGCTCGTTTGCGTATGCCGAACGTT
TTCCTAAAATTCGATTTTGCCATGTTGGAGGGACTCCCCCTCAAGATGTAGATCAGGATATCGAAGAAGACTACAGGAAT
TTTCATGCTGCAGCACATAGTAAGAAACTCGCCGCAATCGGAGAGGTCGGTTTAGATTATTGCTTTGCCACGGAAGAGGG
AATAGCAAGGCAGAAAGAGGTTCTCCAACGCTATTTGGCTTTATCTTTAGAATGCGAACTCCCACTTGTAGTGCATTGTC
GAGGTGCTTTTAACGATTTTTTCCGTATGCTAGACCAATACTACCATAACGATCCACGTTCACGTCCAGGGATGCTGCAT
TGCTTTACAGGAACCTTGGAAGAAGCTCAGGAACTGATCTCTCGGGGATGGTTTATTTCTATAAGTGGGATCGTGACTTT
TAAAAATGCTCAAGATTTGCGAGATCTGGTTGTAGAACTTCCTCTTGAGCATCTTTTAATAGAGACGGATGCGCCTTTTC
TGGCTCCTGTACCTTATCGGGGAAAGAAAAATGAGCCTGCACATGTGCTCCATACGATCAACGCCGTTGCCAATGTAAAA
GGGATGTTCCCACAAGAGCTTGCAGCTCTTGCTTACAAGAACGTCTTACGCTTTCTGCACGGTTAA

Upstream 100 bases:

>100_bases
AAGGATTCTTCTTTAGTGAAGATATTTTCAAGAGAATGTATTCTATAGGGAATTCTTGCCCTGAATGTTCTACGACTTTG
CTTAAACTAGGAGACAACCC

Downstream 100 bases:

>100_bases
TTTGATGGAGTTCATAGAACTCCATAACCTTTCTATTTTGTCATATAAGCTTCTGTTTCTTATGAAAAATTACTTTCCAT
AATTTTATTCTAGCCTCTAT

Product: PHP superfamily (urease/pyrimidinase) hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 261

Protein sequence:

>261_residues
MDLADAHVHLSDDAFEEDINSVLQRAQDSGVSLVVNVTTTEKELNRSFAYAERFPKIRFCHVGGTPPQDVDQDIEEDYRN
FHAAAHSKKLAAIGEVGLDYCFATEEGIARQKEVLQRYLALSLECELPLVVHCRGAFNDFFRMLDQYYHNDPRSRPGMLH
CFTGTLEEAQELISRGWFISISGIVTFKNAQDLRDLVVELPLEHLLIETDAPFLAPVPYRGKKNEPAHVLHTINAVANVK
GMFPQELAALAYKNVLRFLHG

Sequences:

>Translated_261_residues
MDLADAHVHLSDDAFEEDINSVLQRAQDSGVSLVVNVTTTEKELNRSFAYAERFPKIRFCHVGGTPPQDVDQDIEEDYRN
FHAAAHSKKLAAIGEVGLDYCFATEEGIARQKEVLQRYLALSLECELPLVVHCRGAFNDFFRMLDQYYHNDPRSRPGMLH
CFTGTLEEAQELISRGWFISISGIVTFKNAQDLRDLVVELPLEHLLIETDAPFLAPVPYRGKKNEPAHVLHTINAVANVK
GMFPQELAALAYKNVLRFLHG
>Mature_261_residues
MDLADAHVHLSDDAFEEDINSVLQRAQDSGVSLVVNVTTTEKELNRSFAYAERFPKIRFCHVGGTPPQDVDQDIEEDYRN
FHAAAHSKKLAAIGEVGLDYCFATEEGIARQKEVLQRYLALSLECELPLVVHCRGAFNDFFRMLDQYYHNDPRSRPGMLH
CFTGTLEEAQELISRGWFISISGIVTFKNAQDLRDLVVELPLEHLLIETDAPFLAPVPYRGKKNEPAHVLHTINAVANVK
GMFPQELAALAYKNVLRFLHG

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349734, Length=276, Percent_Identity=30.4347826086957, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI110349730, Length=276, Percent_Identity=30.4347826086957, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI226061853, Length=282, Percent_Identity=30.1418439716312, Blast_Score=96, Evalue=5e-20,
Organism=Homo sapiens, GI225903424, Length=171, Percent_Identity=30.9941520467836, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI226061614, Length=266, Percent_Identity=28.1954887218045, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI226061595, Length=238, Percent_Identity=31.5126050420168, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI14042943, Length=197, Percent_Identity=28.9340101522843, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI225903439, Length=197, Percent_Identity=28.9340101522843, Blast_Score=77, Evalue=1e-14,
Organism=Escherichia coli, GI1787342, Length=264, Percent_Identity=36.3636363636364, Blast_Score=146, Evalue=1e-36,
Organism=Escherichia coli, GI48994985, Length=258, Percent_Identity=31.7829457364341, Blast_Score=114, Evalue=9e-27,
Organism=Escherichia coli, GI87082439, Length=252, Percent_Identity=27.3809523809524, Blast_Score=106, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17559024, Length=287, Percent_Identity=26.4808362369338, Blast_Score=103, Evalue=8e-23,
Organism=Caenorhabditis elegans, GI71980746, Length=264, Percent_Identity=26.1363636363636, Blast_Score=95, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17565396, Length=187, Percent_Identity=27.807486631016, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17543026, Length=185, Percent_Identity=27.027027027027, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24648690, Length=217, Percent_Identity=32.258064516129, Blast_Score=101, Evalue=4e-22,
Organism=Drosophila melanogaster, GI221330018, Length=306, Percent_Identity=27.7777777777778, Blast_Score=94, Evalue=7e-20,
Organism=Drosophila melanogaster, GI24586117, Length=281, Percent_Identity=28.4697508896797, Blast_Score=94, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 29452; Mature: 29452

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLADAHVHLSDDAFEEDINSVLQRAQDSGVSLVVNVTTTEKELNRSFAYAERFPKIRFC
CCCCCCEEEECCHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEE
HVGGTPPQDVDQDIEEDYRNFHAAAHSKKLAAIGEVGLDYCFATEEGIARQKEVLQRYLA
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
LSLECELPLVVHCRGAFNDFFRMLDQYYHNDPRSRPGMLHCFTGTLEEAQELISRGWFIS
HHCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHCCCEEE
ISGIVTFKNAQDLRDLVVELPLEHLLIETDAPFLAPVPYRGKKNEPAHVLHTINAVANVK
EEEEEEECCHHHHHHHHHHCCHHHEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
GMFPQELAALAYKNVLRFLHG
CCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDLADAHVHLSDDAFEEDINSVLQRAQDSGVSLVVNVTTTEKELNRSFAYAERFPKIRFC
CCCCCCEEEECCHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEE
HVGGTPPQDVDQDIEEDYRNFHAAAHSKKLAAIGEVGLDYCFATEEGIARQKEVLQRYLA
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
LSLECELPLVVHCRGAFNDFFRMLDQYYHNDPRSRPGMLHCFTGTLEEAQELISRGWFIS
HHCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHCCCEEE
ISGIVTFKNAQDLRDLVVELPLEHLLIETDAPFLAPVPYRGKKNEPAHVLHTINAVANVK
EEEEEEECCHHHHHHHHHHCCHHHEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
GMFPQELAALAYKNVLRFLHG
CCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]