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The map label for this gene is ycfF

Identifier: 15836019

GI number: 15836019

Start: 569083

End: 569415

Strand: Reverse

Name: ycfF

Synonym: CPj0488

Alternate gene names: 15836019

Gene position: 569415-569083 (Counterclockwise)

Preceding gene: 15836020

Following gene: 15836018

Centisome position: 46.42

GC content: 39.64

Gene sequence:

>333_bases
ATGACAGTATTCAAACAAATTATCGATGGATTGATAGATTGTGAAAAGGTATTTGAAAACGAAAATTTCATAGCTATAAA
AGATCGTTTTCCTCAAGCTCCTGTTCATCTTCTTATCATTCCTAAAAAACCTATACCACGATTTCAGGATATCCCAGGGG
ATGAGATGATTTTAATGGCAGAGGCTGGAAAGATCGTGCAAGAGCTTGCTGCAGAATTTGGAATTGCCGATGGGTATCGT
GTGGTTATCAACAACGGTGCTGAAGGAGGACAGGCGGTATTTCACTTACATATTCATCTTTTAGGTGGGCGTCCTTTAGG
TGCTATAGCCTAA

Upstream 100 bases:

>100_bases
GGGCTGTGTTCTGCCATAAAGGTCTTTTCCTTTCTGTATGGACAAATAGAGAAAGTTGCCAACGTGCTTTGCGGTTAACG
TTACAAGATCGAGGGATCAT

Downstream 100 bases:

>100_bases
TTTTCTTTTGTTTCTGTGGATCCTTGTTCGGCTCGGAGTCCCTCCGTTATCAATTGTTGATCCAAGATTTTGCAAAAGTT
TCAGAAGAGGGCATAGGCCT

Product: HIT family hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 110; Mature: 109

Protein sequence:

>110_residues
MTVFKQIIDGLIDCEKVFENENFIAIKDRFPQAPVHLLIIPKKPIPRFQDIPGDEMILMAEAGKIVQELAAEFGIADGYR
VVINNGAEGGQAVFHLHIHLLGGRPLGAIA

Sequences:

>Translated_110_residues
MTVFKQIIDGLIDCEKVFENENFIAIKDRFPQAPVHLLIIPKKPIPRFQDIPGDEMILMAEAGKIVQELAAEFGIADGYR
VVINNGAEGGQAVFHLHIHLLGGRPLGAIA
>Mature_109_residues
TVFKQIIDGLIDCEKVFENENFIAIKDRFPQAPVHLLIIPKKPIPRFQDIPGDEMILMAEAGKIVQELAAEFGIADGYRV
VINNGAEGGQAVFHLHIHLLGGRPLGAIA

Specific function: Unknown

COG id: COG0537

COG function: function code FGR; Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HIT domain

Homologues:

Organism=Homo sapiens, GI14211923, Length=105, Percent_Identity=42.8571428571429, Blast_Score=100, Evalue=4e-22,
Organism=Homo sapiens, GI4885413, Length=105, Percent_Identity=40, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI1787346, Length=107, Percent_Identity=41.1214953271028, Blast_Score=76, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17506713, Length=105, Percent_Identity=41.9047619047619, Blast_Score=95, Evalue=8e-21,
Organism=Drosophila melanogaster, GI28574010, Length=105, Percent_Identity=42.8571428571429, Blast_Score=98, Evalue=1e-21,
Organism=Drosophila melanogaster, GI24581222, Length=105, Percent_Identity=42.8571428571429, Blast_Score=97, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YHIT_CHLPN (Q9Z863)

Other databases:

- EMBL:   AE001363
- EMBL:   AE002161
- EMBL:   BA000008
- EMBL:   AE009440
- PIR:   D86551
- PIR:   G72071
- RefSeq:   NP_224684.1
- RefSeq:   NP_300543.1
- RefSeq:   NP_444817.1
- RefSeq:   NP_876780.1
- ProteinModelPortal:   Q9Z863
- SMR:   Q9Z863
- PHCI-2DPAGE:   Q9Z863
- GeneID:   1467187
- GeneID:   895284
- GeneID:   919234
- GeneID:   963248
- GenomeReviews:   AE001363_GR
- GenomeReviews:   AE002161_GR
- GenomeReviews:   AE009440_GR
- GenomeReviews:   BA000008_GR
- KEGG:   cpa:CP0266
- KEGG:   cpj:CPj0488
- KEGG:   cpn:CPn0488
- KEGG:   cpt:CpB0508
- TIGR:   CP_0266
- HOGENOM:   HBG743217
- OMA:   NCNRHGG
- PhylomeDB:   Q9Z863
- ProtClustDB:   CLSK871348
- BioCyc:   CPNE115711:CP_0266-MONOMER
- BioCyc:   CPNE115713:CPN0488-MONOMER
- BioCyc:   CPNE138677:CPJ0488-MONOMER
- BioCyc:   CPNE182082:CPB0508-MONOMER
- InterPro:   IPR011146
- InterPro:   IPR011151
- InterPro:   IPR019808
- InterPro:   IPR001310
- Gene3D:   G3DSA:3.30.428.10
- PANTHER:   PTHR23089
- PRINTS:   PR00332

Pfam domain/function: PF01230 HIT; SSF54197 His_triad-like_motif

EC number: NA

Molecular weight: Translated: 12071; Mature: 11940

Theoretical pI: Translated: 5.55; Mature: 5.55

Prosite motif: PS00892 HIT_1; PS51084 HIT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVFKQIIDGLIDCEKVFENENFIAIKDRFPQAPVHLLIIPKKPIPRFQDIPGDEMILMA
CCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEE
EAGKIVQELAAEFGIADGYRVVINNGAEGGQAVFHLHIHLLGGRPLGAIA
CHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEEEEEEECCCCCCCCC
>Mature Secondary Structure 
TVFKQIIDGLIDCEKVFENENFIAIKDRFPQAPVHLLIIPKKPIPRFQDIPGDEMILMA
CHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEE
EAGKIVQELAAEFGIADGYRVVINNGAEGGQAVFHLHIHLLGGRPLGAIA
CHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10192388; 10684935; 10871362