Click here to switch to the map view.

The map label for this gene is pmp_17.2

Identifier: 15836000

GI number: 15836000

Start: 539739

End: 540782

Strand: Direct

Name: pmp_17.2

Synonym: CPj0469

Alternate gene names: 15836000

Gene position: 539739-540782 (Clockwise)

Preceding gene: 15835999

Following gene: 15836001

Centisome position: 44.0

GC content: 40.71

Gene sequence:

>1044_bases
ATATTTTCTGCCCTAGGAGTCATTATCTCTTCAAATAAAGAAATTATAGAGATCAGCAATCACTCCGCATCCTCAATTAA
CACAGCATCAGGAAAACTATATCCCGGTGGTGGCGGTATCATGTGTACCTCCTTAGTCATTGAGAACAATCCCAAAGGTC
TTATCTTTAACAATAAAACGGCAGCACTTAGCGGCGGAGCTATACACACGAGATCTTTCATCTTCCAAAATAACGGTCCG
ACAGCATTTATTAATAACTCTGCGACTTCAGGAGGGGCTCTCATCAATCTTTCTGGTATAGGAAGTACTCCTCAAAATTT
CTTCCTCTCTGCAGACTACGGCGATATTCTATTTAACAATAATACAATCACATCTTCTTCTCCTCAACCCGGATATAGAA
ATGCACTCTATGCTGCTCCGGGGATTAACTTAAAACTAGGAGCAAGACAGGGTTATAAAATTCTCTTTTATGATCCTATA
GATCACGATCAGACGACAACAGATCCTATAGTATTTAATTATGAACCCCATCACCTTGGCACCGTGTTGTTTTCCGGAAT
CAATGTAGATTCTAACGCAACAAATCCATTGAACTTCCTATCAAAATTTTCTAACTCTTCACGACTTGAAAGGGGTGTGC
TCGCTATTGAAGATCGGGCTGCTATTTCTTGCAAAACCCTATCGCAAACTGGGGGCATTCTACGTTTAGGAAACGCAGCA
TTAATCAGGACGAAAGGCCCGGGAAGCTCCATAAATTTTAATGCAATCGCGATCAATCTTCCTTCTATTTTACAATCAGA
AGCCTCAGCTCCAAAGTTCTGGATTTATCCTACATTAACAGGATCCACCTATTCTGAAGACACTTCTTCTACTATCACTC
TCTCAGGACCCTTGACTTTTCTAAACGATGAAAATGAAAACCCCTATGATAGCTTAGATCTCTCTGAACCTCGAAAGGAT
ATCCCCCCTCCTCTACCTCCTCGATGTGACTGCAAAAAAAATCGATACTTCGAATCTCATTGTAGAAGCCATGAACTTAG
ATGA

Upstream 100 bases:

>100_bases
ATTCCAGCTTTGGAGGAGGCATCTTCTGCAGAGCCGTAAATATAGAAAGGAATTATCAAAACATCCAAATCAATGATAAT
GCTTCAGGACAAGGGGTGGT

Downstream 100 bases:

>100_bases
GCACTATGGATATCAGGGAATCTGGTCTCCCTATTGGATGGAAACTACGACTACAACAAGCTCTACAGTACCGGAACAGA
CCAATACAAACCACAGGCAG

Product: hypothetical protein

Products: NA

Alternate protein names: Polymorphic membrane protein 15 [H]

Number of amino acids: Translated: 347; Mature: 347

Protein sequence:

>347_residues
MFSALGVIISSNKEIIEISNHSASSINTASGKLYPGGGGIMCTSLVIENNPKGLIFNNKTAALSGGAIHTRSFIFQNNGP
TAFINNSATSGGALINLSGIGSTPQNFFLSADYGDILFNNNTITSSSPQPGYRNALYAAPGINLKLGARQGYKILFYDPI
DHDQTTTDPIVFNYEPHHLGTVLFSGINVDSNATNPLNFLSKFSNSSRLERGVLAIEDRAAISCKTLSQTGGILRLGNAA
LIRTKGPGSSINFNAIAINLPSILQSEASAPKFWIYPTLTGSTYSEDTSSTITLSGPLTFLNDENENPYDSLDLSEPRKD
IPPPLPPRCDCKKNRYFESHCRSHELR

Sequences:

>Translated_347_residues
MFSALGVIISSNKEIIEISNHSASSINTASGKLYPGGGGIMCTSLVIENNPKGLIFNNKTAALSGGAIHTRSFIFQNNGP
TAFINNSATSGGALINLSGIGSTPQNFFLSADYGDILFNNNTITSSSPQPGYRNALYAAPGINLKLGARQGYKILFYDPI
DHDQTTTDPIVFNYEPHHLGTVLFSGINVDSNATNPLNFLSKFSNSSRLERGVLAIEDRAAISCKTLSQTGGILRLGNAA
LIRTKGPGSSINFNAIAINLPSILQSEASAPKFWIYPTLTGSTYSEDTSSTITLSGPLTFLNDENENPYDSLDLSEPRKD
IPPPLPPRCDCKKNRYFESHCRSHELR
>Mature_347_residues
MFSALGVIISSNKEIIEISNHSASSINTASGKLYPGGGGIMCTSLVIENNPKGLIFNNKTAALSGGAIHTRSFIFQNNGP
TAFINNSATSGGALINLSGIGSTPQNFFLSADYGDILFNNNTITSSSPQPGYRNALYAAPGINLKLGARQGYKILFYDPI
DHDQTTTDPIVFNYEPHHLGTVLFSGINVDSNATNPLNFLSKFSNSSRLERGVLAIEDRAAISCKTLSQTGGILRLGNAA
LIRTKGPGSSINFNAIAINLPSILQSEASAPKFWIYPTLTGSTYSEDTSSTITLSGPLTFLNDENENPYDSLDLSEPRKD
IPPPLPPRCDCKKNRYFESHCRSHELR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted, cell wall. Cell outer membrane; Peripheral membrane protein; Extracellular side (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 autotransporter (TC 1.B.12) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005546
- InterPro:   IPR003368
- InterPro:   IPR011427 [H]

Pfam domain/function: PF03797 Autotransporter; PF02415 Chlam_PMP; PF07548 ChlamPMP_M [H]

EC number: NA

Molecular weight: Translated: 37315; Mature: 37315

Theoretical pI: Translated: 7.16; Mature: 7.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSALGVIISSNKEIIEISNHSASSINTASGKLYPGGGGIMCTSLVIENNPKGLIFNNKT
CCCEEEEEEECCCEEEEECCCCCCCEECCCCEEEECCCCEEEEEEEEECCCCEEEECCCC
AALSGGAIHTRSFIFQNNGPTAFINNSATSGGALINLSGIGSTPQNFFLSADYGDILFNN
EEEECCEEEEEEEEEECCCCEEEEECCCCCCCEEEEECCCCCCCHHEEEECCCCCEEECC
NTITSSSPQPGYRNALYAAPGINLKLGARQGYKILFYDPIDHDQTTTDPIVFNYEPHHLG
CEECCCCCCCCCCCEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCEEEECCCCCEE
TVLFSGINVDSNATNPLNFLSKFSNSSRLERGVLAIEDRAAISCKTLSQTGGILRLGNAA
EEEEECCCCCCCCCCHHHHHHHHCCCCHHHCCEEEEECCCEEEEEEHHCCCCEEEECCEE
LIRTKGPGSSINFNAIAINLPSILQSEASAPKFWIYPTLTGSTYSEDTSSTITLSGPLTF
EEEECCCCCCEEEEEEEEECHHHHHHHCCCCEEEEEEEECCCCCCCCCCCEEEEECCEEE
LNDENENPYDSLDLSEPRKDIPPPLPPRCDCKKNRYFESHCRSHELR
ECCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCHHHHHHHCCCC
>Mature Secondary Structure
MFSALGVIISSNKEIIEISNHSASSINTASGKLYPGGGGIMCTSLVIENNPKGLIFNNKT
CCCEEEEEEECCCEEEEECCCCCCCEECCCCEEEECCCCEEEEEEEEECCCCEEEECCCC
AALSGGAIHTRSFIFQNNGPTAFINNSATSGGALINLSGIGSTPQNFFLSADYGDILFNN
EEEECCEEEEEEEEEECCCCEEEEECCCCCCCEEEEECCCCCCCHHEEEECCCCCEEECC
NTITSSSPQPGYRNALYAAPGINLKLGARQGYKILFYDPIDHDQTTTDPIVFNYEPHHLG
CEECCCCCCCCCCCEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCEEEECCCCCEE
TVLFSGINVDSNATNPLNFLSKFSNSSRLERGVLAIEDRAAISCKTLSQTGGILRLGNAA
EEEEECCCCCCCCCCHHHHHHHHCCCCHHHCCEEEEECCCEEEEEEHHCCCCEEEECCEE
LIRTKGPGSSINFNAIAINLPSILQSEASAPKFWIYPTLTGSTYSEDTSSTITLSGPLTF
EEEECCCCCCEEEEEEEEECHHHHHHHCCCCEEEEEEEECCCCCCCCCCCEEEEECCEEE
LNDENENPYDSLDLSEPRKDIPPPLPPRCDCKKNRYFESHCRSHELR
ECCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10192388; 10684935; 10871362 [H]