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The map label for this gene is pmp_17.1

Identifier: 15835999

GI number: 15835999

Start: 538951

End: 539754

Strand: Direct

Name: pmp_17.1

Synonym: CPj0468

Alternate gene names: 15835999

Gene position: 538951-539754 (Clockwise)

Preceding gene: 15835998

Following gene: 15836000

Centisome position: 43.94

GC content: 38.93

Gene sequence:

>804_bases
TTGATGATTTTTTATGACAAACTCTATTTTCATATCAAAGTTTGGATGTTTATGCGACCCATTTGTCTCAGCATTTTATC
CACTGCGCTATGTTGTTCCTTATCAGGAAATGAAGTCCCTAACCTCGCCTCTTGTCAGATGTCTAGAAAAGACATCTCTG
CTTTCCACACGTCTCCAAGCTTCCGTCTGAATGTAACTCCAGAGCCCTTGGTTTCCTCCTTTCGTCCCTCTAATCTTCTT
AATGGATTCGGTCACGATATAACCCAGGACATCACAATTACAGGAAACTCTATCAATTCTGTTATAGATTATAACTACCA
CTACGAGGATGGAGGCATTCTTGCATGTAAAAATTTGTTCATTTCTGAAAATAAAGGAAACTTAAGTTTTGAAAGGAATA
GCTCCCACAGTTCTGGAGGGGCTCTCTACAGTGTTCGGGAATGCTGGATTTCTAAGAATCAGAACTACTCGTTTATTTCA
AATGCGGCTTCCTTAGCTACTACTACAACTTCAGGATTTGGTGGGGCTATACATGCACTGGATAGCTATATTACAAATAA
CTTAGGAGAAGGACAATTCTTAGATAATGTCTCTAAAAATAGAGGAGGAGCTATCTATGTTGGGGTGAGTTTATCAATCA
CAGACAACTTAGGTCCTATCGTTATCAAGAAAAATCAAACATTAGAAGATTCCAGCTTTGGAGGAGGCATCTTCTGCAGA
GCCGTAAATATAGAAAGGAATTATCAAAACATCCAAATCAATGATAATGCTTCAGGACAAGGGGTGGTATATTTTCTGCC
CTAG

Upstream 100 bases:

>100_bases
TATAGAAAATCATTCAAATATATGAGTTTACTAACTCTGTAATATTCAACATGTTAATAAGCATATTTAAATATAAATTT
ATAAACTTCTAGACAACAAA

Downstream 100 bases:

>100_bases
GAGTCATTATCTCTTCAAATAAAGAAATTATAGAGATCAGCAATCACTCCGCATCCTCAATTAACACAGCATCAGGAAAA
CTATATCCCGGTGGTGGCGG

Product: hypothetical protein

Products: NA

Alternate protein names: Polymorphic membrane protein 15 [H]

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MMIFYDKLYFHIKVWMFMRPICLSILSTALCCSLSGNEVPNLASCQMSRKDISAFHTSPSFRLNVTPEPLVSSFRPSNLL
NGFGHDITQDITITGNSINSVIDYNYHYEDGGILACKNLFISENKGNLSFERNSSHSSGGALYSVRECWISKNQNYSFIS
NAASLATTTTSGFGGAIHALDSYITNNLGEGQFLDNVSKNRGGAIYVGVSLSITDNLGPIVIKKNQTLEDSSFGGGIFCR
AVNIERNYQNIQINDNASGQGVVYFLP

Sequences:

>Translated_267_residues
MMIFYDKLYFHIKVWMFMRPICLSILSTALCCSLSGNEVPNLASCQMSRKDISAFHTSPSFRLNVTPEPLVSSFRPSNLL
NGFGHDITQDITITGNSINSVIDYNYHYEDGGILACKNLFISENKGNLSFERNSSHSSGGALYSVRECWISKNQNYSFIS
NAASLATTTTSGFGGAIHALDSYITNNLGEGQFLDNVSKNRGGAIYVGVSLSITDNLGPIVIKKNQTLEDSSFGGGIFCR
AVNIERNYQNIQINDNASGQGVVYFLP
>Mature_267_residues
MMIFYDKLYFHIKVWMFMRPICLSILSTALCCSLSGNEVPNLASCQMSRKDISAFHTSPSFRLNVTPEPLVSSFRPSNLL
NGFGHDITQDITITGNSINSVIDYNYHYEDGGILACKNLFISENKGNLSFERNSSHSSGGALYSVRECWISKNQNYSFIS
NAASLATTTTSGFGGAIHALDSYITNNLGEGQFLDNVSKNRGGAIYVGVSLSITDNLGPIVIKKNQTLEDSSFGGGIFCR
AVNIERNYQNIQINDNASGQGVVYFLP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted, cell wall. Cell outer membrane; Peripheral membrane protein; Extracellular side (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 autotransporter (TC 1.B.12) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005546
- InterPro:   IPR003368
- InterPro:   IPR011427 [H]

Pfam domain/function: PF03797 Autotransporter; PF02415 Chlam_PMP; PF07548 ChlamPMP_M [H]

EC number: NA

Molecular weight: Translated: 29268; Mature: 29268

Theoretical pI: Translated: 6.77; Mature: 6.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMIFYDKLYFHIKVWMFMRPICLSILSTALCCSLSGNEVPNLASCQMSRKDISAFHTSPS
CEEEEEEHEEEHHHHHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHCCHHHHHHHCCCCC
FRLNVTPEPLVSSFRPSNLLNGFGHDITQDITITGNSINSVIDYNYHYEDGGILACKNLF
EEEECCCHHHHHCCCCCHHHHHCCCCCCCEEEEECCCCCCEEEEEEEECCCCEEEEEEEE
ISENKGNLSFERNSSHSSGGALYSVRECWISKNQNYSFISNAASLATTTTSGFGGAIHAL
EECCCCCEEEECCCCCCCCCEEEEEEHHHHCCCCCCCHHHCCHHHEEECCCCCCHHHHHH
DSYITNNLGEGQFLDNVSKNRGGAIYVGVSLSITDNLGPIVIKKNQTLEDSSFGGGIFCR
HHHHHCCCCCCHHHHHHCCCCCCEEEEEEEEEEECCCCCEEEECCCCCCCCCCCCEEEEE
AVNIERNYQNIQINDNASGQGVVYFLP
EEEEECCCEEEEECCCCCCCEEEEEEC
>Mature Secondary Structure
MMIFYDKLYFHIKVWMFMRPICLSILSTALCCSLSGNEVPNLASCQMSRKDISAFHTSPS
CEEEEEEHEEEHHHHHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHCCHHHHHHHCCCCC
FRLNVTPEPLVSSFRPSNLLNGFGHDITQDITITGNSINSVIDYNYHYEDGGILACKNLF
EEEECCCHHHHHCCCCCHHHHHCCCCCCCEEEEECCCCCCEEEEEEEECCCCEEEEEEEE
ISENKGNLSFERNSSHSSGGALYSVRECWISKNQNYSFISNAASLATTTTSGFGGAIHAL
EECCCCCEEEECCCCCCCCCEEEEEEHHHHCCCCCCCHHHCCHHHEEECCCCCCHHHHHH
DSYITNNLGEGQFLDNVSKNRGGAIYVGVSLSITDNLGPIVIKKNQTLEDSSFGGGIFCR
HHHHHCCCCCCHHHHHHCCCCCCEEEEEEEEEEECCCCCEEEECCCCCCCCCCCCEEEEE
AVNIERNYQNIQINDNASGQGVVYFLP
EEEEECCCEEEEECCCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10192388; 10684935; 10871362 [H]